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comparison COBRAxy/flux_to_map.xml @ 217:f9deb464e6a6 draft

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author luca_milaz
date Fri, 13 Dec 2024 18:54:50 +0000
parents d717f69d460e
children 422d8a7b7fb5
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216:b162b98f9de5 217:f9deb464e6a6
144 What it does 144 What it does
145 ------------- 145 -------------
146 146
147 This tool analyzes and visualizes differences in reactions fluxes of groups of samples, returned by the Flux Simulation tool, of groups of samples. 147 This tool analyzes and visualizes differences in reactions fluxes of groups of samples, returned by the Flux Simulation tool, of groups of samples.
148 148
149 Accepted files are: 149 Accepted files are (Files must have different names):
150 - option 1) two or more fluxes datasets, each referring to samples in a given group. The user can specify a label for each group; 150 - option 1) two or more fluxes datasets, each referring to samples in a given group. The user can specify a label for each group;
151 - option 2) one fluxes dataset and one group-file specifying the group each sample belongs to (e.g. the accepted group file is thought to be the one returned by the Clustering tool). 151 - option 2) one fluxes dataset and one group-file specifying the group each sample belongs to (e.g. the accepted group file is thought to be the one returned by the Clustering tool).
152 152
153 Optional files: 153 Optional files:
154 - custom svg map. Graphical elements must have the same IDs of reactions. See HmrCore svg map for an example. 154 - custom svg map. Graphical elements must have the same IDs of reactions. See HmrCore svg map for an example.