Mercurial > repos > bimib > cobraxy

comparison COBRAxy/src/flux_to_map.py @ 542:fcdbc81feb45 draft

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author francesco_lapi
date Sun, 26 Oct 2025 19:27:41 +0000
parents 2fb97466e404
children 5d5583dc6082
comparison
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541:fa93040a75af 542:fcdbc81feb45
7 import pandas as pd 7 import pandas as pd
8 import itertools as it 8 import itertools as it
9 import scipy.stats as st 9 import scipy.stats as st
10 import lxml.etree as ET 10 import lxml.etree as ET
11 import math 11 import math
12 import utils.general_utils as utils 12 try:
13 from .utils import general_utils as utils
14 except:
15 import utils.general_utils as utils
13 from PIL import Image 16 from PIL import Image
14 import os 17 import os
15 import copy 18 import copy
16 import argparse 19 import argparse
17 import pyvips 20 import pyvips
38 41
39 #General: 42 #General:
40 parser.add_argument( 43 parser.add_argument(
41 '-td', '--tool_dir', 44 '-td', '--tool_dir',
42 type = str, 45 type = str,
43 required = True, 46 default = os.path.dirname(os.path.abspath(__file__)),
44 help = 'your tool directory') 47 help = 'your tool directory (default: auto-detected package location)')
45 48
46 parser.add_argument('-on', '--control', type = str) 49 parser.add_argument('-on', '--control', type = str)
47 parser.add_argument('-ol', '--out_log', help = "Output log") 50 parser.add_argument('-ol', '--out_log', help = "Output log")
48 51
49 #Computation details: 52 #Computation details: