Mercurial > repos > bimib > cobraxy
comparison COBRAxy/ras_to_bounds.py @ 236:1e7a8da6c47a draft default tip
Uploaded
| author | luca_milaz |
|---|---|
| date | Tue, 17 Dec 2024 15:38:56 +0000 |
| parents | c2ce7d75fceb |
| children |
comparison
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| 235:5c70439f2907 | 236:1e7a8da6c47a |
|---|---|
| 237 ras = read_dataset(ras_matrix, "ras dataset") | 237 ras = read_dataset(ras_matrix, "ras dataset") |
| 238 ras.replace("None", None, inplace=True) | 238 ras.replace("None", None, inplace=True) |
| 239 ras.set_index("Reactions", drop=True, inplace=True) | 239 ras.set_index("Reactions", drop=True, inplace=True) |
| 240 ras = ras.T | 240 ras = ras.T |
| 241 ras = ras.astype(float) | 241 ras = ras.astype(float) |
| 242 #append class name to patient id (dataframe index) | 242 if(len(ras_file_list)>1): |
| 243 ras.index = [f"{idx}_{ras_class_name}" for idx in ras.index] | 243 #append class name to patient id (dataframe index) |
| 244 ras.index = [f"{idx}_{ras_class_name}" for idx in ras.index] | |
| 245 else: | |
| 246 ras.index = [f"{idx}" for idx in ras.index] | |
| 244 ras_list.append(ras) | 247 ras_list.append(ras) |
| 245 for patient_id in ras.index: | 248 for patient_id in ras.index: |
| 246 class_assignments.loc[class_assignments.shape[0]] = [patient_id, ras_class_name] | 249 class_assignments.loc[class_assignments.shape[0]] = [patient_id, ras_class_name] |
| 247 | 250 |
| 248 | 251 |