Mercurial > repos > bimib > cobraxy
diff COBRAxy/ras_to_bounds.py @ 106:1629671d4ca6 draft
Uploaded
author | luca_milaz |
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date | Sun, 13 Oct 2024 14:01:03 +0000 |
parents | e3b3958c0d88 |
children | 58919e82d96e |
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--- a/COBRAxy/ras_to_bounds.py Sun Oct 13 13:47:24 2024 +0000 +++ b/COBRAxy/ras_to_bounds.py Sun Oct 13 14:01:03 2024 +0000 @@ -196,7 +196,10 @@ model.reactions.get_by_id(reaction).upper_bound = float(df_FVA.loc[reaction, "maximum"]) if ras is not None: - Parallel(n_jobs=cpu_count())(delayed(process_ras_cell)(cellName, ras_row, model, rxns_ids, output_folder) for cellName, ras_row in ras.iterrows()) + #Parallel(n_jobs=cpu_count())(delayed(process_ras_cell)(cellName, ras_row, model, rxns_ids, output_folder) for cellName, ras_row in ras.iterrows()) + for cellName, ras_row in ras.iterrows(): + process_ras_cell(cellName, ras_row, model, rxns_ids, output_folder) + break else: model_new = model.copy() apply_ras_bounds(model_new, pd.Series([1]*len(rxns_ids), index=rxns_ids), rxns_ids)