Mercurial > repos > bimib > cobraxy
diff COBRAxy/rps_generator.py @ 147:3fca9b568faf draft
Uploaded
author | bimib |
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date | Wed, 06 Nov 2024 13:57:24 +0000 |
parents | 41f35c2f0c7b |
children |
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--- a/COBRAxy/rps_generator.py Wed Nov 06 10:12:52 2024 +0000 +++ b/COBRAxy/rps_generator.py Wed Nov 06 13:57:24 2024 +0000 @@ -16,7 +16,7 @@ ########################## argparse ########################################## ARGS :argparse.Namespace -def process_args() -> argparse.Namespace: +def process_args(args:List[str] = None) -> argparse.Namespace: """ Processes command-line arguments. @@ -51,7 +51,7 @@ required = True, help = 'rps output') - args = parser.parse_args() + args = parser.parse_args(args) return args ############################ dataset name ##################################### @@ -222,7 +222,7 @@ df.to_csv(ARGS.rps_output, sep = '\t', na_rep = "None", index = False) ############################ main #################################### -def main() -> None: +def main(args:List[str] = None) -> None: """ Initializes everything and sets the program in motion based on the fronted input arguments. @@ -230,7 +230,7 @@ None """ global ARGS - ARGS = process_args() + ARGS = process_args(args) # TODO:use utils functions vvv with open(ARGS.tool_dir + '/local/pickle files/black_list.pickle', 'rb') as bl: