Mercurial > repos > bimib > cobraxy

diff COBRAxy/utils/model_utils.py @ 427:4a385fdb9e58 draft

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Uploaded
author francesco_lapi
date Wed, 10 Sep 2025 11:38:08 +0000
parents 00a78da611ba
children f49c951c9fe6
line wrap: on
line diff
--- a/COBRAxy/utils/model_utils.py	Wed Sep 10 09:25:32 2025 +0000
+++ b/COBRAxy/utils/model_utils.py	Wed Sep 10 11:38:08 2025 +0000
@@ -221,7 +221,7 @@
     for idx, row in df.iterrows():
 
         reaction_id = str(row['ReactionID']).strip()
-        reaction_formula = str(row['Reaction']).strip()
+        reaction_formula = str(row['Formula']).strip()
         
         # Salta reazioni senza formula
         if not reaction_formula or reaction_formula == 'nan':
@@ -236,8 +236,8 @@
         reaction.upper_bound = float(row['upper_bound']) if pd.notna(row['upper_bound']) else 1000.0
         
         # Aggiungi gene rule se presente
-        if pd.notna(row['Rule']) and str(row['Rule']).strip():
-            reaction.gene_reaction_rule = str(row['Rule']).strip()
+        if pd.notna(row['GPR']) and str(row['GPR']).strip():
+            reaction.gene_reaction_rule = str(row['GPR']).strip()
         
         # Parse della formula della reazione
         try: