Mercurial > repos > bimib > cobraxy

diff COBRAxy/ras_to_bounds.py @ 218:8d1988935e1f draft

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Uploaded
author luca_milaz
date Sat, 14 Dec 2024 18:50:08 +0000
parents b162b98f9de5
children 264a10b57481
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line diff
--- a/COBRAxy/ras_to_bounds.py	Fri Dec 13 18:54:50 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sat Dec 14 18:50:08 2024 +0000
@@ -158,6 +158,8 @@
     """
     bounds = pd.DataFrame([(rxn.lower_bound, rxn.upper_bound) for rxn in model.reactions], index=rxns_ids, columns=["lower_bound", "upper_bound"])
     new_bounds = apply_ras_bounds(bounds, ras_row)
+    if new_bounds.isnull().values.any():
+        warning(f"RAS values for {cellName} contain NaN values. Skipping this cell.")
     new_bounds.to_csv(output_folder + cellName + ".csv", sep='\t', index=True)
     pass