Mercurial > repos > bimib > cobraxy

diff COBRAxy/custom_data_generator_beta.py @ 445:c3bb75ce07e6 draft

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author francesco_lapi
date Thu, 11 Sep 2025 09:08:15 +0000
parents 06564187fba3
children a6e45049c1b9
line wrap: on
line diff
--- a/COBRAxy/custom_data_generator_beta.py	Thu Sep 11 09:03:10 2025 +0000
+++ b/COBRAxy/custom_data_generator_beta.py	Thu Sep 11 09:08:15 2025 +0000
@@ -193,7 +193,7 @@
         model = modelUtils.translate_model_genes(
             model=model,
             mapping_df= pd.read_csv(ARGS.tool_dir + "/local/mappings/genes_human.csv", dtype={'entrez_id': str}),
-            target_nomenclature=ARGS.gene_format.replace("HGNC_", "HGNC "),
+            target_nomenclature=ARGS.gene_format,
             source_nomenclature='HGNC_symbol',
             logger=logger
         )