# HG changeset patch
# User francesco_lapi
# Date 1736249115 0
# Node ID 0916717a5443ed5c93cab0e2dde755630c661cda
# Parent  1e7a8da6c47ad2714fbd51cd970ead4020b9ab3f
Uploaded
diff -r 1e7a8da6c47a -r 0916717a5443 COBRAxy/local/svg metabolic maps/ENGRO2_no_legend_map.svg
--- a/COBRAxy/local/svg metabolic maps/ENGRO2_no_legend_map.svg	Tue Dec 17 15:38:56 2024 +0000
+++ b/COBRAxy/local/svg metabolic maps/ENGRO2_no_legend_map.svg	Tue Jan 07 11:25:15 2025 +0000
@@ -92,13 +92,13 @@
      inkscape:pageopacity="0.0"
      inkscape:pagecheckerboard="0"
      inkscape:deskcolor="#d1d1d1"
-     inkscape:zoom="1.0729879"
-     inkscape:cx="480.43412"
-     inkscape:cy="956.67435"
+     inkscape:zoom="3.0348681"
+     inkscape:cx="163.43379"
+     inkscape:cy="980.1085"
      inkscape:window-width="1920"
-     inkscape:window-height="1017"
-     inkscape:window-x="-8"
-     inkscape:window-y="-8"
+     inkscape:window-height="991"
+     inkscape:window-x="-9"
+     inkscape:window-y="-9"
      inkscape:window-maximized="1"
      inkscape:current-layer="ENGRO2_2"
      showgrid="true">
@@ -5185,5735 +5185,6 @@
       
     
     
-      
-        
-        Mitochondrial space
-        
-      
-      
-        
-        
-        Pi
-        
-          H
-          ⁺
-        
-        Pi
-        
-        
-        ATP
-        ADP
-        ATP
-        ADP
-        
-        
-        GTP
-        GDP
-        GTP
-        GDP
-        
-        
-        
-        
-          HO
-          ₂
-        
-        
-          HO
-          ₂
-        
-        
-          
-            O
-            ₂
-          
-          
-            O
-            ₂
-          
-          
-          
-        
-        NADH
-        
-          NAD
-          ⁺
-        
-        
-          0.95 QH
-          ₂
-        
-        
-          4.75 H
-          ⁺
-        
-        0.95 Q
-        
-          3.8 H
-          ⁺
-        
-        
-          FADH
-          ₂
-        
-        FAD
-        
-          QH
-          ₂
-        
-        Q
-        
-        2 Cytc-ox
-        2 Cytc-red
-        Q
-        
-          2 H
-          ⁺
-        
-        
-          QH
-          ₂
-        
-        
-        
-          4 H
-          ⁺
-        
-        4 Cytc-red
-        4 Cytc-ox
-        
-          2 HO
-          ₂
-        
-        
-          8 H
-          ⁺
-        
-        
-          O
-          ₂
-        
-        
-        GSH
-        GSH
-        
-        
-        
-        Pi
-        Pi
-        
-          
-          
-          Gly
-          Gly
-        
-        Mal
-        AKG
-        AKG
-        
-        
-        
-        ADP
-        Pi
-        ATP
-        
-          HO
-          ₂
-        
-        
-          4 H
-          ⁺
-        
-        10-formylTHF
-        5,10mTHF
-        
-          HO
-          ₂
-        
-        5,10meTHF
-        
-        
-        
-        NADPH
-        
-          NADP
-          ⁺
-        
-        
-          H
-          ⁺
-        
-        THF
-        
-          HO
-          ₂
-        
-        
-          CO
-          ₂
-        
-        
-          CO
-          ₂
-        
-        
-        
-        
-        
-          NADH
-          NADPH
-          
-            NADP
-            ⁺
-          
-          
-            NAD
-            ⁺
-          
-          
-          
-            H
-            ⁺
-          
-          
-          
-            H
-            ⁺
-          
-        
-        
-          
-            HO
-            ₂₂
-          
-          
-            2 HO
-            ₂
-          
-          2 GSH
-          
-            O
-            ₂
-            ⁻
-          
-          
-            O
-            ₂
-            ⁻
-          
-          
-            2 H
-            ⁺
-          
-          
-            O
-            ₂
-          
-          
-          
-          GSSG
-          
-          
-            
-            
-            NADH
-            
-              H
-              ⁺
-            
-            
-              NAD
-              ⁺
-            
-            NADPH
-            
-              H
-              ⁺
-            
-            
-              NADP
-              ⁺
-            
-            
-            
-          
-          
-        
-        
-          
-            CO
-            ₂
-          
-          
-            HCO
-            ₃
-            ⁻
-          
-          
-          
-            H
-            ⁺
-          
-          
-            HO
-            ₂
-          
-          
-        
-        ADP
-        
-          
-          
-          Ser
-          Ser
-          
-        
-        
-          0.05 O
-          ₂
-        
-        
-        
-          0.05 O
-          ₂
-          ⁻
-        
-        
-        
-        DHAP
-        DHAP
-        FAD
-        
-        
-          FADH
-          ₂
-        
-        
-        Gly3P
-        Gly3P
-        
-        
-        
-        
-          AcCoA
-          Pyr
-          
-          
-            NAD
-            ⁺
-          
-          
-            NADP
-            ⁺
-          
-          NADH
-          
-            CO
-            ₂
-          
-          
-            H
-            ⁺
-          
-          
-          
-          
-          Pi
-          ADP
-          
-            H
-            ⁺
-          
-          ATP
-          
-            HCO
-            ₃
-            ⁻
-          
-          
-            NAD
-            ⁺
-          
-          CoA
-          
-            2
-            CO
-          
-          
-            H
-            ⁺
-          
-          NADH
-          
-          
-          
-          
-          NADPH
-          
-            H
-            ⁺
-          
-          
-            CO
-            ₂
-          
-        
-        
-        
-        
-        Pi
-        
-        ATP
-        
-        
-          
-          Formate
-          
-          
-          Formate
-        
-        Formate
-        
-        
-        
-        
-        
-        
-        
-        
-        
-          H
-          ⁺
-        
-        
-          H
-          ⁺
-        
-        
-          H
-          ⁺
-        
-        Mal
-        
-          H
-          ⁺
-        
-        
-          OAA
-          Cit
-          Isocit
-          AKG
-          
-            NADP
-            ⁺
-          
-          SuCoA
-          Succ
-          Fum
-          Mal
-          
-          FAD
-          
-            FADH
-            ₂
-          
-          
-            NAD
-            ⁺
-          
-          
-          
-            HO
-            ₂
-          
-          CoA
-          
-          
-          
-          
-            HO
-            ₂
-          
-          
-          
-          
-          
-          
-          
-          NADH
-          
-            H
-            ⁺
-          
-          
-          
-            
-            GDP
-            Pi
-            CoA
-            GTP
-            
-            
-          
-          
-            CoA
-            
-              NAD
-              ⁺
-            
-            
-            
-            NADH
-            
-              CO
-              ₂
-            
-            
-              H
-              ⁺
-            
-          
-          
-            NADPH
-            ⁺
-          
-          
-            CO
-            ₂
-          
-          
-            H
-            ⁺
-          
-          
-          
-          
-          
-            NAD
-            ⁺
-          
-          
-            NADH
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          
-            CO
-            ₂
-          
-          
-          
-          
-          
-        
-        
-          
-          
-          
-          
-          
-          NADH
-          
-            H
-            ⁺
-          
-          
-            NH
-            ₃
-          
-          
-            NAD
-            ⁺
-          
-          
-            HO
-            ₂
-          
-          NADPH
-          
-            H
-            ⁺
-          
-          
-            NH
-            ₃
-          
-          
-            NADP
-            ⁺
-          
-          
-            HO
-            ₂
-          
-        
-        
-        
-        
-        
-        
-        
-        
-          NADP
-          ⁺
-        
-        NADPH
-        
-          H
-          ⁺
-        
-        DHF
-        
-        
-        
-        
-          NADP
-          ⁺
-        
-        NADPH
-        
-          H
-          ⁺
-        
-        Folate
-        
-        
-        
-        
-          4 H
-          ⁺
-        
-        
-          4 H
-          ⁺
-        
-        
-          NADH
-          
-            H
-            ⁺
-          
-          
-            HO
-            ₂
-          
-          
-            NAD
-            ⁺
-          
-          
-          
-          
-          Gln
-          Glu
-          
-          
-          Gln
-          
-          
-          
-            NH
-            ₃
-          
-          Glu
-          
-            HO
-            ₂
-          
-          
-          
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-        
-        Folate
-        
-        
-        
-        
-          +
-          H
-        
-        Mal
-        
-          GluSA
-          
-          
-          
-          GluSA
-        
-        
-        
-          
-          
-          
-            
-            
-              
-              
-            
-            
-              
-              
-            
-          
-          Val, 3mob, propCoA
-        
-        
-          Fum
-          
-          
-          
-          Pi
-          Pi
-          Fum
-        
-        
-          2oxoadp
-          2oxoadp
-          
-          AKG
-          AKG
-        
-        
-          
-          
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          Lys
-          Lys
-        
-        
-          4mop
-          4mop
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          
-          
-        
-        
-          5,10meTHF
-          5,10meTHF
-          
-          
-          
-        
-        
-          Val
-          Val
-          
-          
-          
-        
-        
-          propCoA
-          propCoA
-          
-          
-          
-        
-        
-          3mob
-          3mob
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          
-          
-        
-        
-          Leu
-          Leu
-          
-          
-          
-        
-        
-          AKG
-          Glu
-          
-          
-          
-          Asp
-          Glu
-          
-            H
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          Glu
-          
-          
-        
-        
-          AcAcCoA
-          
-          
-          CoA
-          2 AcCoA
-          
-          
-          
-          NADH
-          
-            NAD
-            ⁺
-          
-          
-            H
-            ⁺
-          
-          
-            
-            
-              
-              
-            
-            
-              
-              
-            
-          
-          
-            
-            
-              
-              
-            
-            
-              
-              
-            
-          
-          HMGCoA
-          Leu, 4mop
-          Lys, 2oxoadp
-          
-          AcCoA
-          
-            HO
-            ₂
-          
-          CoA
-          
-            H
-            ⁺
-          
-          
-          
-            HO
-            ₂
-          
-          
-          
-        
-      
-    
-    
       PEP
         
-          
+             stroke-width="3.82234"
+             rx="22.153215"
+             ry="21.805044" />
           Pyr
+             style="white-space:pre;stroke-width:0.955584"
+             font-family="Arial"
+             font-size="15.2893px"
+             font-weight="bold"
+             letter-spacing="0em"
+             x="8.0808363"
+             y="44.981598"
+             transform="scale(1.0079521,0.99211065)">Pyr
         
         
     
     
+      
+        
+        Mitochondrial space
+        
+      
+      
+        
+        
+        Pi
+        
+          H
+          ⁺
+        
+        Pi
+        
+        
+        ATP
+        ADP
+        ATP
+        ADP
+        
+        
+        GTP
+        GDP
+        GTP
+        GDP
+        
+        
+        
+        
+          HO
+          ₂
+        
+        
+          HO
+          ₂
+        
+        
+          
+            O
+            ₂
+          
+          
+            O
+            ₂
+          
+          
+          
+        
+        NADH
+        
+          NAD
+          ⁺
+        
+        
+          0.95 QH
+          ₂
+        
+        
+          4.75 H
+          ⁺
+        
+        0.95 Q
+        
+          3.8 H
+          ⁺
+        
+        
+          FADH
+          ₂
+        
+        FAD
+        
+          QH
+          ₂
+        
+        Q
+        
+        2 Cytc-ox
+        2 Cytc-red
+        Q
+        
+          2 H
+          ⁺
+        
+        
+          QH
+          ₂
+        
+        
+        
+          4 H
+          ⁺
+        
+        4 Cytc-red
+        4 Cytc-ox
+        
+          2 HO
+          ₂
+        
+        
+          8 H
+          ⁺
+        
+        
+          O
+          ₂
+        
+        
+        GSH
+        GSH
+        
+        
+        
+        Pi
+        Pi
+        
+          
+          
+          Gly
+          Gly
+        
+        Mal
+        AKG
+        AKG
+        
+        
+        
+        ADP
+        Pi
+        ATP
+        
+          HO
+          ₂
+        
+        
+          4 H
+          ⁺
+        
+        10-formylTHF
+        5,10mTHF
+        
+          HO
+          ₂
+        
+        5,10meTHF
+        
+        
+        
+        NADPH
+        
+          NADP
+          ⁺
+        
+        
+          H
+          ⁺
+        
+        THF
+        
+          HO
+          ₂
+        
+        
+          CO
+          ₂
+        
+        
+          CO
+          ₂
+        
+        
+        
+        
+        
+          NADH
+          NADPH
+          
+            NADP
+            ⁺
+          
+          
+            NAD
+            ⁺
+          
+          
+          
+            H
+            ⁺
+          
+          
+          
+            H
+            ⁺
+          
+        
+        
+          
+            HO
+            ₂₂
+          
+          
+            2 HO
+            ₂
+          
+          2 GSH
+          
+            O
+            ₂
+            ⁻
+          
+          
+            O
+            ₂
+            ⁻
+          
+          
+            2 H
+            ⁺
+          
+          
+            O
+            ₂
+          
+          
+          
+          GSSG
+          
+          
+            
+            
+            NADH
+            
+              H
+              ⁺
+            
+            
+              NAD
+              ⁺
+            
+            NADPH
+            
+              H
+              ⁺
+            
+            
+              NADP
+              ⁺
+            
+            
+            
+          
+          
+        
+        
+          
+            CO
+            ₂
+          
+          
+            HCO
+            ₃
+            ⁻
+          
+          
+          
+            H
+            ⁺
+          
+          
+            HO
+            ₂
+          
+          
+        
+        ADP
+        
+          
+          
+          Ser
+          Ser
+          
+        
+        
+          0.05 O
+          ₂
+        
+        
+        
+          0.05 O
+          ₂
+          ⁻
+        
+        
+        
+        DHAP
+        DHAP
+        FAD
+        
+        
+          FADH
+          ₂
+        
+        
+        Gly3P
+        Gly3P
+        
+        
+        
+        
+          AcCoA
+          Pyr
+          
+          
+            NAD
+            ⁺
+          
+          
+            NADP
+            ⁺
+          
+          NADH
+          
+            CO
+            ₂
+          
+          
+            H
+            ⁺
+          
+          
+          
+          
+          Pi
+          ADP
+          
+            H
+            ⁺
+          
+          ATP
+          
+            HCO
+            ₃
+            ⁻
+          
+          
+            NAD
+            ⁺
+          
+          CoA
+          
+            2
+            CO
+          
+          
+            H
+            ⁺
+          
+          NADH
+          
+          
+          
+          
+          NADPH
+          
+            H
+            ⁺
+          
+          
+            CO
+            ₂
+          
+        
+        
+        
+        
+        Pi
+        
+        ATP
+        
+        
+          
+          Formate
+          
+          
+          Formate
+        
+        Formate
+        
+        
+        
+        
+        
+        
+        
+        
+        
+          H
+          ⁺
+        
+        
+          H
+          ⁺
+        
+        
+          H
+          ⁺
+        
+        Mal
+        
+          H
+          ⁺
+        
+        
+          OAA
+          Cit
+          Isocit
+          AKG
+          
+            NADP
+            ⁺
+          
+          SuCoA
+          Succ
+          Fum
+          Mal
+          
+          FAD
+          
+            FADH
+            ₂
+          
+          
+            NAD
+            ⁺
+          
+          
+          
+            HO
+            ₂
+          
+          CoA
+          
+          
+          
+          
+            HO
+            ₂
+          
+          
+          
+          
+          
+          
+          
+          NADH
+          
+            H
+            ⁺
+          
+          
+          
+            
+            GDP
+            Pi
+            CoA
+            GTP
+            
+            
+          
+          
+            CoA
+            
+              NAD
+              ⁺
+            
+            
+            
+            NADH
+            
+              CO
+              ₂
+            
+            
+              H
+              ⁺
+            
+          
+          
+            NADPH
+            ⁺
+          
+          
+            CO
+            ₂
+          
+          
+            H
+            ⁺
+          
+          
+          
+          
+          
+            NAD
+            ⁺
+          
+          
+            NADH
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          
+            CO
+            ₂
+          
+          
+          
+          
+          
+        
+        
+          
+          
+          
+          
+          
+          NADH
+          
+            H
+            ⁺
+          
+          
+            NH
+            ₃
+          
+          
+            NAD
+            ⁺
+          
+          
+            HO
+            ₂
+          
+          NADPH
+          
+            H
+            ⁺
+          
+          
+            NH
+            ₃
+          
+          
+            NADP
+            ⁺
+          
+          
+            HO
+            ₂
+          
+        
+        
+        
+        
+        
+        
+        
+        
+          NADP
+          ⁺
+        
+        NADPH
+        
+          H
+          ⁺
+        
+        DHF
+        
+        
+        
+        
+          NADP
+          ⁺
+        
+        NADPH
+        
+          H
+          ⁺
+        
+        Folate
+        
+        
+        
+        
+          4 H
+          ⁺
+        
+        
+          4 H
+          ⁺
+        
+        
+          NADH
+          
+            H
+            ⁺
+          
+          
+            HO
+            ₂
+          
+          
+            NAD
+            ⁺
+          
+          
+          
+          
+          Gln
+          Glu
+          
+          
+          Gln
+          
+          
+          
+            NH
+            ₃
+          
+          Glu
+          
+            HO
+            ₂
+          
+          
+          
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+        
+        Folate
+        
+        
+        
+        
+        
+          +
+          H
+        
+        Mal
+        
+          GluSA
+          
+          
+          
+          GluSA
+        
+        
+        
+          
+          
+          
+            
+            
+              
+              
+            
+            
+              
+              
+            
+          
+          Val, 3mob, propCoA
+        
+        
+          Fum
+          
+          
+          
+          Pi
+          Pi
+          Fum
+        
+        
+          2oxoadp
+          2oxoadp
+          
+          AKG
+          AKG
+        
+        
+          
+          
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          Lys
+          Lys
+        
+        
+          4mop
+          4mop
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          
+          
+        
+        
+          5,10meTHF
+          5,10meTHF
+          
+          
+          
+        
+        
+          Val
+          Val
+          
+          
+          
+        
+        
+          propCoA
+          propCoA
+          
+          
+          
+        
+        
+          3mob
+          3mob
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          
+          
+        
+        
+          Leu
+          Leu
+          
+          
+          
+        
+        
+          AKG
+          Glu
+          
+          
+          
+          Asp
+          Glu
+          
+            H
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          Glu
+          
+          
+        
+        
+          AcAcCoA
+          
+          
+          CoA
+          2 AcCoA
+          
+          
+          
+          NADH
+          
+            NAD
+            ⁺
+          
+          
+            H
+            ⁺
+          
+          
+            
+            
+              
+              
+            
+            
+              
+              
+            
+          
+          
+            
+            
+              
+              
+            
+            
+              
+              
+            
+          
+          HMGCoA
+          Leu, 4mop
+          Lys, 2oxoadp
+          
+          AcCoA
+          
+            HO
+            ₂
+          
+          CoA
+          
+            H
+            ⁺
+          
+          
+          
+            HO
+            ₂
+          
+          
+          
+        
+      
+    
+