# HG changeset patch
# User francesco_lapi
# Date 1736249115 0
# Node ID 0916717a5443ed5c93cab0e2dde755630c661cda
# Parent 1e7a8da6c47ad2714fbd51cd970ead4020b9ab3f
Uploaded
diff -r 1e7a8da6c47a -r 0916717a5443 COBRAxy/local/svg metabolic maps/ENGRO2_no_legend_map.svg
--- a/COBRAxy/local/svg metabolic maps/ENGRO2_no_legend_map.svg Tue Dec 17 15:38:56 2024 +0000
+++ b/COBRAxy/local/svg metabolic maps/ENGRO2_no_legend_map.svg Tue Jan 07 11:25:15 2025 +0000
@@ -92,13 +92,13 @@
inkscape:pageopacity="0.0"
inkscape:pagecheckerboard="0"
inkscape:deskcolor="#d1d1d1"
- inkscape:zoom="1.0729879"
- inkscape:cx="480.43412"
- inkscape:cy="956.67435"
+ inkscape:zoom="3.0348681"
+ inkscape:cx="163.43379"
+ inkscape:cy="980.1085"
inkscape:window-width="1920"
- inkscape:window-height="1017"
- inkscape:window-x="-8"
- inkscape:window-y="-8"
+ inkscape:window-height="991"
+ inkscape:window-x="-9"
+ inkscape:window-y="-9"
inkscape:window-maximized="1"
inkscape:current-layer="ENGRO2_2"
showgrid="true">
@@ -5185,5735 +5185,6 @@
-
-
- Mitochondrial space
-
-
-
-
-
- Pi
-
- H
- ⁺
-
- Pi
-
-
- ATP
- ADP
- ATP
- ADP
-
-
- GTP
- GDP
- GTP
- GDP
-
-
-
-
- HO
- ₂
-
-
- HO
- ₂
-
-
-
- O
- ₂
-
-
- O
- ₂
-
-
-
-
- NADH
-
- NAD
- ⁺
-
-
- 0.95 QH
- ₂
-
-
- 4.75 H
- ⁺
-
- 0.95 Q
-
- 3.8 H
- ⁺
-
-
- FADH
- ₂
-
- FAD
-
- QH
- ₂
-
- Q
-
- 2 Cytc-ox
- 2 Cytc-red
- Q
-
- 2 H
- ⁺
-
-
- QH
- ₂
-
-
-
- 4 H
- ⁺
-
- 4 Cytc-red
- 4 Cytc-ox
-
- 2 HO
- ₂
-
-
- 8 H
- ⁺
-
-
- O
- ₂
-
-
- GSH
- GSH
-
-
-
- Pi
- Pi
-
-
-
- Gly
- Gly
-
- Mal
- AKG
- AKG
-
-
-
- ADP
- Pi
- ATP
-
- HO
- ₂
-
-
- 4 H
- ⁺
-
- 10-formylTHF
- 5,10mTHF
-
- HO
- ₂
-
- 5,10meTHF
-
-
-
- NADPH
-
- NADP
- ⁺
-
-
- H
- ⁺
-
- THF
-
- HO
- ₂
-
-
- CO
- ₂
-
-
- CO
- ₂
-
-
-
-
-
- NADH
- NADPH
-
- NADP
- ⁺
-
-
- NAD
- ⁺
-
-
-
- H
- ⁺
-
-
-
- H
- ⁺
-
-
-
-
- HO
- ₂₂
-
-
- 2 HO
- ₂
-
- 2 GSH
-
- O
- ₂
- ⁻
-
-
- O
- ₂
- ⁻
-
-
- 2 H
- ⁺
-
-
- O
- ₂
-
-
-
- GSSG
-
-
-
-
- NADH
-
- H
- ⁺
-
-
- NAD
- ⁺
-
- NADPH
-
- H
- ⁺
-
-
- NADP
- ⁺
-
-
-
-
-
-
-
-
- CO
- ₂
-
-
- HCO
- ₃
- ⁻
-
-
-
- H
- ⁺
-
-
- HO
- ₂
-
-
-
- ADP
-
-
-
- Ser
- Ser
-
-
-
- 0.05 O
- ₂
-
-
-
- 0.05 O
- ₂
- ⁻
-
-
-
- DHAP
- DHAP
- FAD
-
-
- FADH
- ₂
-
-
- Gly3P
- Gly3P
-
-
-
-
- AcCoA
- Pyr
-
-
- NAD
- ⁺
-
-
- NADP
- ⁺
-
- NADH
-
- CO
- ₂
-
-
- H
- ⁺
-
-
-
-
- Pi
- ADP
-
- H
- ⁺
-
- ATP
-
- HCO
- ₃
- ⁻
-
-
- NAD
- ⁺
-
- CoA
-
- 2
- CO
-
-
- H
- ⁺
-
- NADH
-
-
-
-
- NADPH
-
- H
- ⁺
-
-
- CO
- ₂
-
-
-
-
-
- Pi
-
- ATP
-
-
-
- Formate
-
-
- Formate
-
- Formate
-
-
-
-
-
-
-
-
-
- H
- ⁺
-
-
- H
- ⁺
-
-
- H
- ⁺
-
- Mal
-
- H
- ⁺
-
-
- OAA
- Cit
- Isocit
- AKG
-
- NADP
- ⁺
-
- SuCoA
- Succ
- Fum
- Mal
-
- FAD
-
- FADH
- ₂
-
-
- NAD
- ⁺
-
-
-
- HO
- ₂
-
- CoA
-
-
-
-
- HO
- ₂
-
-
-
-
-
-
-
- NADH
-
- H
- ⁺
-
-
-
-
- GDP
- Pi
- CoA
- GTP
-
-
-
-
- CoA
-
- NAD
- ⁺
-
-
-
- NADH
-
- CO
- ₂
-
-
- H
- ⁺
-
-
-
- NADPH
- ⁺
-
-
- CO
- ₂
-
-
- H
- ⁺
-
-
-
-
-
- NAD
- ⁺
-
-
- NADH
- ⁺
-
-
- H
- ⁺
-
-
- CO
- ₂
-
-
-
-
-
-
-
-
-
-
-
-
- NADH
-
- H
- ⁺
-
-
- NH
- ₃
-
-
- NAD
- ⁺
-
-
- HO
- ₂
-
- NADPH
-
- H
- ⁺
-
-
- NH
- ₃
-
-
- NADP
- ⁺
-
-
- HO
- ₂
-
-
-
-
-
-
-
-
-
- NADP
- ⁺
-
- NADPH
-
- H
- ⁺
-
- DHF
-
-
-
-
- NADP
- ⁺
-
- NADPH
-
- H
- ⁺
-
- Folate
-
-
-
-
- 4 H
- ⁺
-
-
- 4 H
- ⁺
-
-
- NADH
-
- H
- ⁺
-
-
- HO
- ₂
-
-
- NAD
- ⁺
-
-
-
-
- Gln
- Glu
-
-
- Gln
-
-
-
- NH
- ₃
-
- Glu
-
- HO
- ₂
-
-
-
-
- H
- ⁺
-
-
- H
- ⁺
-
-
- H
- ⁺
-
-
- H
- ⁺
-
-
- Folate
-
-
-
-
- +
- H
-
- Mal
-
- GluSA
-
-
-
- GluSA
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Val, 3mob, propCoA
-
-
- Fum
-
-
-
- Pi
- Pi
- Fum
-
-
- 2oxoadp
- 2oxoadp
-
- AKG
- AKG
-
-
-
-
-
- H
- ⁺
-
-
- H
- ⁺
-
- Lys
- Lys
-
-
- 4mop
- 4mop
-
- H
- ⁺
-
-
- H
- ⁺
-
-
-
-
-
- 5,10meTHF
- 5,10meTHF
-
-
-
-
-
- Val
- Val
-
-
-
-
-
- propCoA
- propCoA
-
-
-
-
-
- 3mob
- 3mob
-
- H
- ⁺
-
-
- H
- ⁺
-
-
-
-
-
- Leu
- Leu
-
-
-
-
-
- AKG
- Glu
-
-
-
- Asp
- Glu
-
- H
- ⁺
-
-
- H
- ⁺
-
- Glu
-
-
-
-
- AcAcCoA
-
-
- CoA
- 2 AcCoA
-
-
-
- NADH
-
- NAD
- ⁺
-
-
- H
- ⁺
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- HMGCoA
- Leu, 4mop
- Lys, 2oxoadp
-
- AcCoA
-
- HO
- ₂
-
- CoA
-
- H
- ⁺
-
-
-
- HO
- ₂
-
-
-
-
-
-
-
PEP
-
+ stroke-width="3.82234"
+ rx="22.153215"
+ ry="21.805044" />
Pyr
+ style="white-space:pre;stroke-width:0.955584"
+ font-family="Arial"
+ font-size="15.2893px"
+ font-weight="bold"
+ letter-spacing="0em"
+ x="8.0808363"
+ y="44.981598"
+ transform="scale(1.0079521,0.99211065)">Pyr
+
+
+ Mitochondrial space
+
+
+
+
+
+ Pi
+
+ H
+ ⁺
+
+ Pi
+
+
+ ATP
+ ADP
+ ATP
+ ADP
+
+
+ GTP
+ GDP
+ GTP
+ GDP
+
+
+
+
+ HO
+ ₂
+
+
+ HO
+ ₂
+
+
+
+ O
+ ₂
+
+
+ O
+ ₂
+
+
+
+
+ NADH
+
+ NAD
+ ⁺
+
+
+ 0.95 QH
+ ₂
+
+
+ 4.75 H
+ ⁺
+
+ 0.95 Q
+
+ 3.8 H
+ ⁺
+
+
+ FADH
+ ₂
+
+ FAD
+
+ QH
+ ₂
+
+ Q
+
+ 2 Cytc-ox
+ 2 Cytc-red
+ Q
+
+ 2 H
+ ⁺
+
+
+ QH
+ ₂
+
+
+
+ 4 H
+ ⁺
+
+ 4 Cytc-red
+ 4 Cytc-ox
+
+ 2 HO
+ ₂
+
+
+ 8 H
+ ⁺
+
+
+ O
+ ₂
+
+
+ GSH
+ GSH
+
+
+
+ Pi
+ Pi
+
+
+
+ Gly
+ Gly
+
+ Mal
+ AKG
+ AKG
+
+
+
+ ADP
+ Pi
+ ATP
+
+ HO
+ ₂
+
+
+ 4 H
+ ⁺
+
+ 10-formylTHF
+ 5,10mTHF
+
+ HO
+ ₂
+
+ 5,10meTHF
+
+
+
+ NADPH
+
+ NADP
+ ⁺
+
+
+ H
+ ⁺
+
+ THF
+
+ HO
+ ₂
+
+
+ CO
+ ₂
+
+
+ CO
+ ₂
+
+
+
+
+
+ NADH
+ NADPH
+
+ NADP
+ ⁺
+
+
+ NAD
+ ⁺
+
+
+
+ H
+ ⁺
+
+
+
+ H
+ ⁺
+
+
+
+
+ HO
+ ₂₂
+
+
+ 2 HO
+ ₂
+
+ 2 GSH
+
+ O
+ ₂
+ ⁻
+
+
+ O
+ ₂
+ ⁻
+
+
+ 2 H
+ ⁺
+
+
+ O
+ ₂
+
+
+
+ GSSG
+
+
+
+
+ NADH
+
+ H
+ ⁺
+
+
+ NAD
+ ⁺
+
+ NADPH
+
+ H
+ ⁺
+
+
+ NADP
+ ⁺
+
+
+
+
+
+
+
+
+ CO
+ ₂
+
+
+ HCO
+ ₃
+ ⁻
+
+
+
+ H
+ ⁺
+
+
+ HO
+ ₂
+
+
+
+ ADP
+
+
+
+ Ser
+ Ser
+
+
+
+ 0.05 O
+ ₂
+
+
+
+ 0.05 O
+ ₂
+ ⁻
+
+
+
+ DHAP
+ DHAP
+ FAD
+
+
+ FADH
+ ₂
+
+
+ Gly3P
+ Gly3P
+
+
+
+
+ AcCoA
+ Pyr
+
+
+ NAD
+ ⁺
+
+
+ NADP
+ ⁺
+
+ NADH
+
+ CO
+ ₂
+
+
+ H
+ ⁺
+
+
+
+
+ Pi
+ ADP
+
+ H
+ ⁺
+
+ ATP
+
+ HCO
+ ₃
+ ⁻
+
+
+ NAD
+ ⁺
+
+ CoA
+
+ 2
+ CO
+
+
+ H
+ ⁺
+
+ NADH
+
+
+
+
+ NADPH
+
+ H
+ ⁺
+
+
+ CO
+ ₂
+
+
+
+
+
+ Pi
+
+ ATP
+
+
+
+ Formate
+
+
+ Formate
+
+ Formate
+
+
+
+
+
+
+
+
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+ Mal
+
+ H
+ ⁺
+
+
+ OAA
+ Cit
+ Isocit
+ AKG
+
+ NADP
+ ⁺
+
+ SuCoA
+ Succ
+ Fum
+ Mal
+
+ FAD
+
+ FADH
+ ₂
+
+
+ NAD
+ ⁺
+
+
+
+ HO
+ ₂
+
+ CoA
+
+
+
+
+ HO
+ ₂
+
+
+
+
+
+
+
+ NADH
+
+ H
+ ⁺
+
+
+
+
+ GDP
+ Pi
+ CoA
+ GTP
+
+
+
+
+ CoA
+
+ NAD
+ ⁺
+
+
+
+ NADH
+
+ CO
+ ₂
+
+
+ H
+ ⁺
+
+
+
+ NADPH
+ ⁺
+
+
+ CO
+ ₂
+
+
+ H
+ ⁺
+
+
+
+
+
+ NAD
+ ⁺
+
+
+ NADH
+ ⁺
+
+
+ H
+ ⁺
+
+
+ CO
+ ₂
+
+
+
+
+
+
+
+
+
+
+
+
+ NADH
+
+ H
+ ⁺
+
+
+ NH
+ ₃
+
+
+ NAD
+ ⁺
+
+
+ HO
+ ₂
+
+ NADPH
+
+ H
+ ⁺
+
+
+ NH
+ ₃
+
+
+ NADP
+ ⁺
+
+
+ HO
+ ₂
+
+
+
+
+
+
+
+
+
+ NADP
+ ⁺
+
+ NADPH
+
+ H
+ ⁺
+
+ DHF
+
+
+
+
+ NADP
+ ⁺
+
+ NADPH
+
+ H
+ ⁺
+
+ Folate
+
+
+
+
+ 4 H
+ ⁺
+
+
+ 4 H
+ ⁺
+
+
+ NADH
+
+ H
+ ⁺
+
+
+ HO
+ ₂
+
+
+ NAD
+ ⁺
+
+
+
+
+ Gln
+ Glu
+
+
+ Gln
+
+
+
+ NH
+ ₃
+
+ Glu
+
+ HO
+ ₂
+
+
+
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+
+ Folate
+
+
+
+
+
+ +
+ H
+
+ Mal
+
+ GluSA
+
+
+
+ GluSA
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Val, 3mob, propCoA
+
+
+ Fum
+
+
+
+ Pi
+ Pi
+ Fum
+
+
+ 2oxoadp
+ 2oxoadp
+
+ AKG
+ AKG
+
+
+
+
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+ Lys
+ Lys
+
+
+ 4mop
+ 4mop
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+
+
+
+
+ 5,10meTHF
+ 5,10meTHF
+
+
+
+
+
+ Val
+ Val
+
+
+
+
+
+ propCoA
+ propCoA
+
+
+
+
+
+ 3mob
+ 3mob
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+
+
+
+
+ Leu
+ Leu
+
+
+
+
+
+ AKG
+ Glu
+
+
+
+ Asp
+ Glu
+
+ H
+ ⁺
+
+
+ H
+ ⁺
+
+ Glu
+
+
+
+
+ AcAcCoA
+
+
+ CoA
+ 2 AcCoA
+
+
+
+ NADH
+
+ NAD
+ ⁺
+
+
+ H
+ ⁺
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ HMGCoA
+ Leu, 4mop
+ Lys, 2oxoadp
+
+ AcCoA
+
+ HO
+ ₂
+
+ CoA
+
+ H
+ ⁺
+
+
+
+ HO
+ ₂
+
+
+
+
+
+
+