# HG changeset patch
# User luca_milaz
# Date 1728810066 0
# Node ID 1f928ad6a87e9f0b25d459dd47111da148790d3e
# Parent  c46df775b9fad1b897f23f29aebc90e59c761915
Uploaded

diff -r c46df775b9fa -r 1f928ad6a87e COBRAxy/ras_to_bounds.py
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 08:36:26 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 09:01:06 2024 +0000
@@ -63,6 +63,11 @@
                     type = str,
                     help = 'output of cell class')
     
+    parser.add_argument('-rn', '--names',
+                    required = True,
+                    type=str,
+                    help = 'ras class names')
+    
     ARGS = parser.parse_args()
     return ARGS
 
@@ -216,8 +221,9 @@
 
     if(ARGS.ras_selector == True):
         ras_file_list = ARGS.input_ras.split(",")
+        ras_file_names = ARGS.names.split(",")
         ras_class_names = []
-        for file in ras_file_list:
+        for file in ras_file_names:
             ras_class_names.append(file.split(".")[0])
         ras_list = []
         class_assignments = pd.DataFrame(columns=["Patient_ID", "Class"])