# HG changeset patch
# User luca_milaz
# Date 1726734205 0
# Node ID 291721be77ade9c242ecf0bc65ebc5520bd146f4
# Parent  b61fc7f1b6ab6f2eba745a92dfcc79554eed9867
Uploaded

diff -r b61fc7f1b6ab -r 291721be77ad COBRAxy/custom_data_generator.py
--- a/COBRAxy/custom_data_generator.py	Thu Sep 19 08:23:15 2024 +0000
+++ b/COBRAxy/custom_data_generator.py	Thu Sep 19 08:23:25 2024 +0000
@@ -147,7 +147,7 @@
 ###############################- FILE SAVING -################################
 def save_as_csv_filePath(data :dict, file_path :utils.FilePath, fieldNames :Tuple[str, str]) -> None:
     """
-    Saves any dictionary-shaped data in a .csv file created at the given file_path.
+    Saves any dictionary-shaped data in a .csv file created at the given file_path as FilePath.
 
     Args:
         data : the data to be written to the file.
@@ -166,7 +166,7 @@
 
 def save_as_csv(data :dict, file_path :str, fieldNames :Tuple[str, str]) -> None:
     """
-    Saves any dictionary-shaped data in a .csv file created at the given file_path.
+    Saves any dictionary-shaped data in a .csv file created at the given file_path as string.
 
     Args:
         data : the data to be written to the file.
@@ -202,19 +202,17 @@
     model = load_custom_model(
         utils.FilePath.fromStrPath(ARGS.input), utils.FilePath.fromStrPath(ARGS.name).ext)
 
+    # generate data
     rules = generate_rules(model, asParsed = False)
     reactions = generate_reactions(model, asParsed = False)
     bounds = generate_bounds(model)
     medium = get_medium(model)
 
-
+    # save files out of collection: path coming from xml
     save_as_csv(rules, ARGS.out_rules, ("ReactionID", "Rule"))
     save_as_csv(reactions, ARGS.out_reactions, ("ReactionID", "Reaction"))
     bounds.to_csv(ARGS.out_bounds, sep = '\t')
     medium.to_csv(ARGS.out_medium, sep = '\t')
 
-
-    # ^ Please if anyone works on this after updating python to 3.12 change the if/elif into a match statement!!
-
 if __name__ == '__main__':
     main()
\ No newline at end of file