# HG changeset patch
# User francesco_lapi
# Date 1732293083 0
# Node ID 5476b09782bc9db02c5b9e95452d8f278ba74200
# Parent a4c3caed84fe2ff657888bf2581e3452c6a303a7
Uploaded
diff -r a4c3caed84fe -r 5476b09782bc COBRAxy/local/svg metabolic maps/ENGRO2_map.svg
--- a/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg Fri Nov 22 15:21:49 2024 +0000
+++ b/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg Fri Nov 22 16:31:23 2024 +0000
@@ -6,7 +6,7 @@
fill="none"
version="1.1"
id="svg5792"
- sodipodi:docname="ENGRO2_map_1122.svg"
+ sodipodi:docname="ENGRO2_map.svg"
inkscape:version="1.4 (86a8ad7, 2024-10-11)"
xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
@@ -31,9 +31,9 @@
inkscape:pagecheckerboard="0"
inkscape:deskcolor="#d1d1d1"
showgrid="false"
- inkscape:zoom="1.9442505"
- inkscape:cx="110.06812"
- inkscape:cy="1494.4062"
+ inkscape:zoom="0.68739636"
+ inkscape:cx="603.72738"
+ inkscape:cy="1340.5657"
inkscape:window-width="1920"
inkscape:window-height="991"
inkscape:window-x="-9"
@@ -45,11 +45,11 @@
height="2412"
fill="#f5f5f5"
id="rect2"
- x="81.664886"
+ x="79.664886"
y="31.259863" />
+ transform="translate(-4.4342642,-0.95335109)">
@@ -926,429 +927,315 @@
id="g27"
inkscape:label="metabolites_left">
-
-
-
- CySS
- Ala
- CySS
- Ala
-
-
-
-
- Leu
- CySS
- CySS
- Leu
-
-
-
-
- Ser
- Ser
- CySS
- CySS
-
-
-
-
- CySS
- CySS
- Glu
- Glu
-
+ id="g6"
+ inkscape:label="Group t_Lcystin_ala__L">
+
+
+ CySS
+ Ala
+ CySS
+ Ala
+
+
+
+
+ Leu
+ CySS
+ CySS
+ Leu
+
+
+
+
+ Ser
+ Ser
+ CySS
+ CySS
+
+
+
+
+ CySS
+ CySS
+ Glu
+ Glu
- Chol
-
-
-
-
-
- Palm
-
-
-
-
-
-
-
- Pi
-
-
+
+
+ Pi
+
+
+
+
+
+ HO
+ ₂
+
+
+
+
+
+
+ H
+
+
+
@@ -1440,121 +1443,94 @@
stroke-width="2.09785" />
-
+ Palm
+
-
- H
-
-
-
-
-
+
+
-
- HO
- ₂
-
-
+
+
+ Chol
+
-
-
-
-
-
- anth
+ stroke-width="2.32759"
+ inkscape:label="F_r1050" />
+
+
+
4abut
+
+
+
+ anth
+
-
+
+ inkscape:label="R_GLYAMDTRc">
+
+
+
₂
-
+
+ inkscape:label="R_GACMTRc">
+
+
+
+ d="m 379.969,1745.95 c -9.327,1.99 -9.327,1.99 -9.327,1.99 l 9.224,2.27 -2.268,-2.17 z m 13.455,13.24 c 3.277,9.61 3.277,9.61 3.277,9.61 l 2.47,-9.85 -2.773,2.55 z"
+ fill="#2b0000"
+ stroke="#000000"
+ stroke-width="2.23952" />
-
+
+ inkscape:label="R_ARGDr">
+
+
+
-
+
+ inkscape:label="R_DHFR">
+
+
+
-
+
+ inkscape:label="R_FOLR2">
+
+
+
-
+ inkscape:label="R_FTHFLi">
+
+
+
-
+
+ inkscape:label="R_FTHFDH">
+
+
+
+ stroke-linecap="round"
+ sodipodi:nodetypes="cssssssssc" />
Amino acids synthesis / degradation
@@ -2795,7 +2870,7 @@
id="tspan714">Pentose Phosphate pathway
@@ -2828,7 +2903,7 @@
id="tspan721">Nucleotide synthesis
@@ -2861,7 +2936,7 @@
id="tspan728">Fatty acids / Cholesterol synthesis
@@ -2894,7 +2969,7 @@
id="tspan735">Urea cycle
@@ -2927,7 +3002,7 @@
id="tspan742">Ammonia detox
@@ -2960,7 +3035,7 @@
id="tspan749">Biomass
@@ -2993,7 +3068,7 @@
id="tspan756">Fatty acids β-oxidation
@@ -3008,10 +3083,11 @@
fill-opacity="0.1" />
+ stroke-linecap="round"
+ sodipodi:nodetypes="cssssssssc" />
Glutathione synthesis
@@ -3060,10 +3136,10 @@
id="tspan770">Glycolysis / Gluconeogenesis
+ stroke-width="2.62587"
+ inkscape:label="F_DmGSSG" />
@@ -5172,24 +5249,11 @@
d="m 2400.27,395.262 c -14.68,0 -14.68,10.5 -14.68,10.5 m 14.68,30.5 c 0,0 -14.68,1.5 -14.68,-13.5 0,0 0,-10.5 14.68,-10.5 m -14.68,-45.882 v 93.382 m 14.68,-80.5 c -14.68,0 -14.68,10.5 -14.68,10.5 m 0,50.5 c 0,15 14.68,13.5 14.68,13.5"
stroke="#000000"
stroke-width="1.90151" />
-
-
-
-
-
+
+ transform="matrix(0.99609327,0,0,0.99818223,10.290067,14.005269)">
-
+
+
+
+
-
+
+
+
+
-
+
+
+
+
-
+ inkscape:label="R_CTPS1">
+
+
+
+ stroke-miterlimit="5.75877" />
ATP
-
+ inkscape:label="R_NDPK8">
+
+
+
-
+
+
+
+
ATP
-
+
+
+
+
ATP
-
+ inkscape:label="R_NDPK2">
+
+
+
ATP
-
+
+
+
+
-
+
+
+
+
ATP
-
+ inkscape:label="R_GK1">
+
+
+
-
+ inkscape:label="R_RNDR2">
+
+
+
-
+ inkscape:label="R_NDPK5">
+
+
+
-
+ inkscape:label="R_NDPK1">
+
+
+
O
H
-
-
-
-
-
-
+
-
-
-
-
-
+
Glu
-
-
-
-
+
@@ -16637,22 +16791,12 @@
y="1109.83"
id="tspan4777">20.65 H
-
-
-
-
+ d="m 2197.91,1437.75 v -316.97 m -77.68,318.12 h 77.26 m -77.26,-21.95 h 77.26 m -77.26,-25.96 h 77.26 m -77.26,-37.96 h 77.26 m -76.89,-24.33 h 77.25 m -77.25,-43.95 h 77.25 m -77.25,-25.96 h 77.25 m -77.25,-27.96 h 77.25 m -77.25,-27.95 h 77.25 m -77.25,-27.96 h 77.25 m -77.25,-25.95 h 77.25 m -77.25,-29.41 h 77.25 m 167.19,265.81 v -239.38 m 1.79,237.09 h 77.25 m -79.07,-20.78 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -243.5543,91.9411 165.4711,-0.1025 M 2306.93,1484.35 h -60.45 m 86.11,34.74 H 2218.1 m 27.59,-16.32 v -39.56 m 62.83,41.38 v -39.57 m -140.29,38.11 h 77.26 m -77.72,-17.87 h 77.26 m -76.8,-21.69 h 77.26 m 63.29,40.88 h 77.26 m -77.71,-19.87 h 77.26 m -76.81,-19.69 h 77.26 m -168.08,68.36 v -14.96 m 59.71,15.86 v -14.96 m 54.45,13.46 v -14.96 M 2278.47,1075.5 V 1484 m 73.21,-375.43 v -32.75 m 0.16,0.71 h 25.49 m -186.71,20.44 h 162.64 m -2.15,11.35 h 28.94"
+ stroke="#000000"
+ stroke-width="1.72969"
+ id="R_Biomass"
+ sodipodi:nodetypes="cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc"
+ inkscape:label="R_Biomass" />
GDP
-
-
-
-
-
+
+ id="use1272-8-6-5"
+ transform="translate(4.0156882)">
+ transform="matrix(0.99609327,0,0,0.99818223,14.290067,14.005269)">
+ id="use1272-8-6-5-0"
+ transform="translate(4.0156882)">
4mop
@@ -19632,7 +19765,8 @@
stroke="#000000"
stroke-width="2.66667" />
+ id="use1272-8-6-5-0-4"
+ transform="translate(4.0156882)">
Ser
+ id="text7967-0-3-65-1-3-2-82-0">
-
+ d="m 691.745,741 v 40 c 0,0 -41.898,17.507 -68.745,28.724 M 284,955.5 c 0,0 75.167,-32.914 164,-71.224 0,0 -1.5,-7.108 4.5,-9.693 9,-3.877 13,1.417 13,1.417 51.88,-22.323 111.551,-47.076 157.5,-66.276 m 0,0 C 589,823.5 579,812.5 579,812.5"
+ stroke="#000000"
+ stroke-width="2.22" />
+
+
+
+