# HG changeset patch # User francesco_lapi # Date 1732293083 0 # Node ID 5476b09782bc9db02c5b9e95452d8f278ba74200 # Parent a4c3caed84fe2ff657888bf2581e3452c6a303a7 Uploaded diff -r a4c3caed84fe -r 5476b09782bc COBRAxy/local/svg metabolic maps/ENGRO2_map.svg --- a/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg Fri Nov 22 15:21:49 2024 +0000 +++ b/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg Fri Nov 22 16:31:23 2024 +0000 @@ -6,7 +6,7 @@ fill="none" version="1.1" id="svg5792" - sodipodi:docname="ENGRO2_map_1122.svg" + sodipodi:docname="ENGRO2_map.svg" inkscape:version="1.4 (86a8ad7, 2024-10-11)" xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape" xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd" @@ -31,9 +31,9 @@ inkscape:pagecheckerboard="0" inkscape:deskcolor="#d1d1d1" showgrid="false" - inkscape:zoom="1.9442505" - inkscape:cx="110.06812" - inkscape:cy="1494.4062" + inkscape:zoom="0.68739636" + inkscape:cx="603.72738" + inkscape:cy="1340.5657" inkscape:window-width="1920" inkscape:window-height="991" inkscape:window-x="-9" @@ -45,11 +45,11 @@ height="2412" fill="#f5f5f5" id="rect2" - x="81.664886" + x="79.664886" y="31.259863" /> + transform="translate(-4.4342642,-0.95335109)"> @@ -926,429 +927,315 @@ id="g27" inkscape:label="metabolites_left"> - - - - CySS - Ala - CySS - Ala - - - - - Leu - CySS - CySS - Leu - - - - - Ser - Ser - CySS - CySS - - - - - CySS - CySS - Glu - Glu - + id="g6" + inkscape:label="Group t_Lcystin_ala__L"> + + + CySS + Ala + CySS + Ala + + + + + Leu + CySS + CySS + Leu + + + + + Ser + Ser + CySS + CySS + + + + + CySS + CySS + Glu + Glu - Chol - - - - - - Palm - - - - - - - - Pi - - + + + Pi + + + + + + HO + + + + + + + + H + + + @@ -1440,121 +1443,94 @@ stroke-width="2.09785" /> - + Palm + - - H - - - - - + + - - HO - - - + + + Chol + - - - - - - anth + stroke-width="2.32759" + inkscape:label="F_r1050" /> + + + 4abut + + + + anth + - + + inkscape:label="R_GLYAMDTRc"> + + + - + + inkscape:label="R_GACMTRc"> + + + + d="m 379.969,1745.95 c -9.327,1.99 -9.327,1.99 -9.327,1.99 l 9.224,2.27 -2.268,-2.17 z m 13.455,13.24 c 3.277,9.61 3.277,9.61 3.277,9.61 l 2.47,-9.85 -2.773,2.55 z" + fill="#2b0000" + stroke="#000000" + stroke-width="2.23952" /> - + + inkscape:label="R_ARGDr"> + + + - + + inkscape:label="R_DHFR"> + + + - + + inkscape:label="R_FOLR2"> + + + - + inkscape:label="R_FTHFLi"> + + + - + + inkscape:label="R_FTHFDH"> + + + + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Amino acids synthesis / degradation @@ -2795,7 +2870,7 @@ id="tspan714">Pentose Phosphate pathway @@ -2828,7 +2903,7 @@ id="tspan721">Nucleotide synthesis @@ -2861,7 +2936,7 @@ id="tspan728">Fatty acids / Cholesterol synthesis @@ -2894,7 +2969,7 @@ id="tspan735">Urea cycle @@ -2927,7 +3002,7 @@ id="tspan742">Ammonia detox @@ -2960,7 +3035,7 @@ id="tspan749">Biomass @@ -2993,7 +3068,7 @@ id="tspan756">Fatty acids β-oxidation @@ -3008,10 +3083,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Glutathione synthesis @@ -3060,10 +3136,10 @@ id="tspan770">Glycolysis / Gluconeogenesis + stroke-width="2.62587" + inkscape:label="F_DmGSSG" /> @@ -5172,24 +5249,11 @@ d="m 2400.27,395.262 c -14.68,0 -14.68,10.5 -14.68,10.5 m 14.68,30.5 c 0,0 -14.68,1.5 -14.68,-13.5 0,0 0,-10.5 14.68,-10.5 m -14.68,-45.882 v 93.382 m 14.68,-80.5 c -14.68,0 -14.68,10.5 -14.68,10.5 m 0,50.5 c 0,15 14.68,13.5 14.68,13.5" stroke="#000000" stroke-width="1.90151" /> - - - - - + + transform="matrix(0.99609327,0,0,0.99818223,10.290067,14.005269)"> - + + + + - + + + + - + + + + - + inkscape:label="R_CTPS1"> + + + + stroke-miterlimit="5.75877" /> ATP - + inkscape:label="R_NDPK8"> + + + - + + + + ATP - + + + + ATP - + inkscape:label="R_NDPK2"> + + + ATP - + + + + - + + + + ATP - + inkscape:label="R_GK1"> + + + - + inkscape:label="R_RNDR2"> + + + - + inkscape:label="R_NDPK5"> + + + - + inkscape:label="R_NDPK1"> + + + O H - - - - - - + - - - - - + Glu - - - - + @@ -16637,22 +16791,12 @@ y="1109.83" id="tspan4777">20.65 H - - - - + d="m 2197.91,1437.75 v -316.97 m -77.68,318.12 h 77.26 m -77.26,-21.95 h 77.26 m -77.26,-25.96 h 77.26 m -77.26,-37.96 h 77.26 m -76.89,-24.33 h 77.25 m -77.25,-43.95 h 77.25 m -77.25,-25.96 h 77.25 m -77.25,-27.96 h 77.25 m -77.25,-27.95 h 77.25 m -77.25,-27.96 h 77.25 m -77.25,-25.95 h 77.25 m -77.25,-29.41 h 77.25 m 167.19,265.81 v -239.38 m 1.79,237.09 h 77.25 m -79.07,-20.78 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -77.26,-23.96 h 77.26 m -77.26,-23.95 h 77.26 m -243.5543,91.9411 165.4711,-0.1025 M 2306.93,1484.35 h -60.45 m 86.11,34.74 H 2218.1 m 27.59,-16.32 v -39.56 m 62.83,41.38 v -39.57 m -140.29,38.11 h 77.26 m -77.72,-17.87 h 77.26 m -76.8,-21.69 h 77.26 m 63.29,40.88 h 77.26 m -77.71,-19.87 h 77.26 m -76.81,-19.69 h 77.26 m -168.08,68.36 v -14.96 m 59.71,15.86 v -14.96 m 54.45,13.46 v -14.96 M 2278.47,1075.5 V 1484 m 73.21,-375.43 v -32.75 m 0.16,0.71 h 25.49 m -186.71,20.44 h 162.64 m -2.15,11.35 h 28.94" + stroke="#000000" + stroke-width="1.72969" + id="R_Biomass" + sodipodi:nodetypes="cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc" + inkscape:label="R_Biomass" /> GDP - - - - - + + id="use1272-8-6-5" + transform="translate(4.0156882)"> + transform="matrix(0.99609327,0,0,0.99818223,14.290067,14.005269)"> + id="use1272-8-6-5-0" + transform="translate(4.0156882)"> 4mop @@ -19632,7 +19765,8 @@ stroke="#000000" stroke-width="2.66667" /> + id="use1272-8-6-5-0-4" + transform="translate(4.0156882)"> Ser + id="text7967-0-3-65-1-3-2-82-0"> - + d="m 691.745,741 v 40 c 0,0 -41.898,17.507 -68.745,28.724 M 284,955.5 c 0,0 75.167,-32.914 164,-71.224 0,0 -1.5,-7.108 4.5,-9.693 9,-3.877 13,1.417 13,1.417 51.88,-22.323 111.551,-47.076 157.5,-66.276 m 0,0 C 589,823.5 579,812.5 579,812.5" + stroke="#000000" + stroke-width="2.22" /> + + + +