# HG changeset patch
# User francesco_lapi
# Date 1747752476 0
# Node ID 5a595a737220d4924b8f9810e627174ab15d27f9
# Parent  24783af8a2f97df76977ed4c9f2e393b0b8cc961
Uploaded

diff -r 24783af8a2f9 -r 5a595a737220 COBRAxy/marea.xml
--- a/COBRAxy/marea.xml	Tue May 20 14:47:38 2025 +0000
+++ b/COBRAxy/marea.xml	Tue May 20 14:47:56 2025 +0000
@@ -179,12 +179,13 @@
 			</param>
 
 			<when value="true">
-				<param name="test" argument="--test" type="select" label="Statistical test to use:" help="Select the statistical test to use for the analysis based on your data and the amount of replicates.">
+				<param name="test" argument="--test" type="select" label="Statistical test to use:" help="Select the statistical test to use for the analysis based on your data and the amount of replicates.  Paired T-test and Wilcoxon need the same number of replicates in each group.">
 					<option value="ks" selected="true">Kolmogorov-Smirnov</option>
 					<option value="ttest_p">T-test (paired)</option>
 					<option value="ttest_ind">T-test (unpaired)</option>
 					<option value="wilcoxon">Wilcoxon</option>
 					<option value="mw">Mann-Whitney</option>
+					<option value="DESeq">DESeq2 like statistical test</option>
 				</param>
 				<param name="pValue" argument="--pValue" type="float" size="20" value="0.05" max="1" min="0" label="P-value threshold:" help="min value 0" />
 				<param name="adjusted" argument="--adjusted" type="boolean" checked="false" label="Use adjusted p-values" help="Should the program adjust the P-values based on the FDR (Benjamini-Hochberg) correction?" />