# HG changeset patch
# User luca_milaz
# Date 1728834130 0
# Node ID 76e87d3b9e0e75b05760669fc5c6c747c4ac8adc
# Parent  ba10ad78fc5f749dfc78aa2051164fcf2ba7870a
Uploaded

diff -r ba10ad78fc5f -r 76e87d3b9e0e COBRAxy/ras_to_bounds.py
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 15:37:33 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 15:42:10 2024 +0000
@@ -177,6 +177,7 @@
     # Set medium conditions
     for reaction, value in medium.items():
         if value is not None:
+            warning(str(reaction) + " " + str(value))
             if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):
                 model.reactions.get_by_id(reaction).lower_bound = -float(value)
             if(reaction == "EX_lac__L_e"):
@@ -266,8 +267,6 @@
         medium = df_mediums[[ARGS.medium_selector]]
         medium = medium[ARGS.medium_selector].to_dict()
 
-    warning(str(medium))
-
     if(ARGS.ras_selector == True):
         generate_bounds(model, medium, ras = ras_combined, output_folder=ARGS.output_folder)
         class_assignments.to_csv(ARGS.cell_class, sep = '\t', index = False)