# HG changeset patch
# User francesco_lapi
# Date 1757519294 0
# Node ID 8091c0c1ca54cb374a3f678d933acda077e000d3
# Parent  44f91eba4776848c8c6aed9b6299a893f9bcbbb3
Uploaded

diff -r 44f91eba4776 -r 8091c0c1ca54 COBRAxy/flux_simulation_beta.xml
--- a/COBRAxy/flux_simulation_beta.xml	Wed Sep 10 15:42:39 2025 +0000
+++ b/COBRAxy/flux_simulation_beta.xml	Wed Sep 10 15:48:14 2025 +0000
@@ -46,9 +46,6 @@
         --seed $seed
         --output_type "${",".join(map(str, $output_types))}"
         --output_type_analysis "${",".join(map(str, $output_types_analysis))}"
-        #if 'FVA' in $output_types_analysis:
-            --fva_percentage $fva_params.fva_percentage
-        #end if
         --out_log $log
         ]]>
     </command>
@@ -103,15 +100,6 @@
             <option value="FVA" selected="false">FVA</option>
             <option value="sensitivity" selected="false">Sensitivity reaction knock-out (Biomass)</option>
         </param>
-
-        <conditional name="fva_params">
-            <param name="show_fva_options" type="hidden" value="#echo 'FVA' in str($output_types_analysis)#"/>
-            <when value="True">
-                <param name="fva_percentage" argument="--fva_percentage" type="float" label="FVA percentage of optimum:" 
-                       value="1.0" min="0.0" max="1.0" 
-                       help="Percentage of the optimal objective value to use as constraint in FVA (0.0-1.0). Default is 1.0 (100% of optimum)."/>
-            </when>
-        </conditional>
     </inputs>
 
     <outputs>