# HG changeset patch # User francesco_lapi # Date 1732616237 0 # Node ID 8b9f263f924ef5d42b5f4894aa8dfd33d0fb6d57 # Parent fe58dddc96c8164c61221ef55b9e7d496d9b40fb Uploaded diff -r fe58dddc96c8 -r 8b9f263f924e COBRAxy/local/svg metabolic maps/ENGRO2_map.svg --- a/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg Mon Nov 25 11:21:35 2024 +0000 +++ b/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg Tue Nov 26 10:17:17 2024 +0000 @@ -30,16 +30,32 @@ inkscape:pageopacity="0.0" inkscape:pagecheckerboard="0" inkscape:deskcolor="#d1d1d1" - showgrid="false" - inkscape:zoom="1.9442505" - inkscape:cx="1002.1857" - inkscape:cy="2208.306" + showgrid="true" + inkscape:zoom="0.68739635" + inkscape:cx="1593.6948" + inkscape:cy="972.51026" inkscape:window-width="1920" inkscape:window-height="1017" inkscape:window-x="-8" inkscape:window-y="-8" inkscape:window-maximized="1" - inkscape:current-layer="ENGRO2_2" /> + inkscape:current-layer="ENGRO2_2" + showguides="true"> + + Tyr + id="tspan194" + style="fill:#000000">Tyr Pro + id="tspan210" + style="fill:#000000">Pro Ser + id="tspan170" + style="fill:#000000">Ser Glu + id="tspan157" + style="fill:#000000">Glu Gln + id="tspan218" + style="fill:#000000">Gln Gly + id="tspan173" + style="fill:#000000">Gly Cys + id="tspan202" + style="fill:#000000">Cys Asp + id="tspan134" + style="fill:#000000">Asp Asn + id="tspan181" + style="fill:#000000">Asn Ala + id="tspan131" + style="fill:#000000">Ala Arg + id="tspan148" + style="fill:#000000">Arg + style="stroke-width:2.3;stroke:#000000;stroke-opacity:1;stroke-dasharray:none" /> CySS + style="stroke-width:0.997137;fill:#000000">CySS Ala + style="stroke-width:0.997137;fill:#000000">Ala CySS + style="stroke-width:0.997137;fill:#000000">CySS Ala + style="stroke-width:0.997137;fill:#000000">Ala + style="fill:none;stroke-width:2.30660334;stroke-dasharray:none;stroke:#000000;stroke-opacity:1" /> + style="fill:none;stroke-width:2.3;stroke:#000000;stroke-opacity:1;stroke-dasharray:none" /> + style="fill:none;stroke-width:2.30660334;stroke-dasharray:none;stroke:#000000;stroke-opacity:1" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> @@ -2093,7 +2124,8 @@ d="m 429.5,2074.5 c 9.36,-1.83 9.36,-1.83 9.36,-1.83 L 432,2069.5 Z m -12.291,0 c 2.791,9.76 2.791,9.76 2.791,9.76 l 2.961,-9.71 -2.897,2.41 z" fill="#2b0000" stroke="#000000" - stroke-width="2.23952" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> + stroke-width="2.23952" + style="fill:none" /> Glutathione synthesis @@ -3240,10 +3277,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Biomass @@ -3269,103 +3307,112 @@ id="text5640-6" fill="#2b0000" xml:space="preserve" - style="white-space:pre" + style="white-space:pre;fill:#000000" font-family="Inter" font-size="16.1333px" letter-spacing="0em">0.01 dTTP + id="tspan4670" + style="fill:#000000">0.01 dTTP 0.01 dATP + id="tspan4673" + style="fill:#000000">0.01 dATP 0.01 dGTP + id="tspan4676" + style="fill:#000000">0.01 dGTP 0.05 UTP + id="tspan4679" + style="fill:#000000">0.05 UTP 0.01 dCTP + id="tspan4682" + style="fill:#000000">0.01 dCTP 0.04CTP + id="tspan4685" + style="fill:#000000">0.04CTP 0.27 Palm + id="tspan4688" + style="fill:#000000">0.27 Palm 0.20 Chol + id="tspan4691" + style="fill:#000000">0.20 Chol 0.28 G6P + id="tspan4694" + style="fill:#000000">0.28 G6P @@ -3373,256 +3420,279 @@ id="text6883-6-8" fill="#2b0000" xml:space="preserve" - style="white-space:pre" + style="white-space:pre;fill:#000000" font-family="Inter" font-size="16px" letter-spacing="0em">20.65 H20 + id="tspan4698" + style="fill:#000000">20.65 H20 20.70 ATP + id="tspan4701" + style="fill:#000000">20.70 ATP 0.04 GTP + id="tspan4705" + style="fill:#000000">0.04 GTP 0.36 Arg + id="tspan4708" + style="fill:#000000">0.36 Arg 0.05 Cys + id="tspan4711" + style="fill:#000000">0.05 Cys 0.39 Glu + id="tspan4714" + style="fill:#000000">0.39 Glu 0.35 Asp + id="tspan4717" + style="fill:#000000">0.35 Asp 0.33 Gln + id="tspan4720" + style="fill:#000000">0.33 Gln 0.28 Asn + id="tspan4723" + style="fill:#000000">0.28 Asn 0.29 Ile + id="tspan4726" + style="fill:#000000">0.29 Ile 0.12 His + id="tspan4729" + style="fill:#000000">0.12 His 0.54 Gly + id="tspan4732" + style="fill:#000000">0.54 Gly 0.59Lys + id="tspan4735" + style="fill:#000000">0.59Lys 0.41 Pro + id="tspan4738" + style="fill:#000000">0.41 Pro 0.26 Phe + id="tspan4741" + style="fill:#000000">0.26 Phe 0.15 Met + id="tspan4744" + style="fill:#000000">0.15 Met 0.55 Leu + id="tspan4747" + style="fill:#000000">0.55 Leu 0.01 Trp + id="tspan4750" + style="fill:#000000">0.01 Trp 0.31Thr + id="tspan4753" + style="fill:#000000">0.31Thr 0.16 Tyr + id="tspan4756" + style="fill:#000000">0.16 Tyr 0.35Val + id="tspan4759" + style="fill:#000000">0.35Val 0.39 Ser + id="tspan4762" + style="fill:#000000">0.39 Ser 0.51 Ala + id="tspan4765" + style="fill:#000000">0.51 Ala 20.65 H - 20.65 H + + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Fatty acids / Cholesterol synthesis @@ -4775,10 +4847,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Ammonia detox @@ -5166,10 +5239,11 @@ inkscape:label="box_mitochondria_space"> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Mitochondrial space @@ -10896,10 +10970,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Urea cycle @@ -11138,10 +11213,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Fatty acids β-oxidation @@ -11462,7 +11538,7 @@ fill-opacity="0.1" /> Amino acids synthesis / degradation @@ -13689,10 +13765,11 @@ y="643.15997" id="tspan5653">AKG + stroke-width="2.66667" + inkscape:label="B_LEUTA" /> @@ -14189,10 +14266,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Nucleotide synthesis @@ -15062,26 +15140,28 @@ id="text7967-0-3-6-2" fill="#2b0000" xml:space="preserve" - style="white-space:pre" + style="white-space:pre;fill:#000000" font-family="Arial" font-size="16px" font-weight="bold" letter-spacing="0em">GDP + id="tspan1969" + style="fill:#000000">GDP dGDP + id="tspan1972" + style="fill:#000000">dGDP ADP + id="tspan2083" + style="fill:#000000">ADP - NAD + id="tspan2130" + style="fill:#000000">NAD + id="tspan2134" + style="fill:#000000">⁺ HHO + id="tspan2141" + style="fill:#000000">O + id="tspan2145" + style="fill:#000000">₂ ATP + id="tspan2150" + style="fill:#000000">ATP NH + id="tspan2153" + style="fill:#000000">NH + id="tspan2157" + style="fill:#000000">₃ NADH + id="tspan2162" + style="fill:#000000">NADH H + id="tspan2165" + style="fill:#000000">H + id="tspan2169" + style="fill:#000000">⁺ AMP + id="tspan2174" + style="fill:#000000">AMP PPi + id="tspan2177" + style="fill:#000000">PPi NADP + id="tspan2181" + style="fill:#000000">NADP + id="tspan2185" + style="fill:#000000">⁺ NH + id="tspan2190" + style="fill:#000000">NH + id="tspan2194" + style="fill:#000000">₃ H + id="tspan2199" + style="fill:#000000">H + id="tspan2203" + style="fill:#000000">⁺ NADPH + id="tspan2208" + style="fill:#000000">NADPH ATP + id="tspan2219" + style="fill:#000000">ATP + stroke-width="1.95125" + style="fill:none" /> + stroke-width="1.95125" + style="fill:none" /> + stroke-width="1.95125" + style="fill:none" /> + stroke-width="1.95125" + style="fill:none" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Pentose Phosphate pathway @@ -16735,10 +16841,11 @@ fill-opacity="0.1" /> + stroke-linecap="round" + sodipodi:nodetypes="cssssssssc" /> Glycolysis / Gluconeogenesis PPi + AMP + CoA - + + d="m 1453.9164,856.93616 c 0.3662,-13.86218 28.749,-12.01673 28.749,-12.01673 m -81.8209,12.4836 c -1.4152,-19.40601 14.9383,-12.3979 16.0554,-14.73999 m -145.2667,13.58249 187.5951,1.18738 24.4791,-0.23684 c 11.5406,-0.11549 9.1922,21.1558 9.1922,21.1558 M 1358.7608,857.0927 c -33.6147,1.60593 -31.9892,10.79254 -31.9892,10.79254 m -16.8753,-11.23828 c -23.5105,-0.38608 -28.7325,10.9471 -28.7325,10.9471" + inkscape:label="R_ACS" + sodipodi:nodetypes="cccccccccccc" /> - - - -