# HG changeset patch # User luca_milaz # Date 1728820476 0 # Node ID 9f1a751652fc1d09028d552009d5c7a9dd5c9507 # Parent 54ded7f28a60615cf804ca80862516c65ae5eb39 Uploaded diff -r 54ded7f28a60 -r 9f1a751652fc COBRAxy/ras_to_bounds.xml --- a/COBRAxy/ras_to_bounds.xml Sun Oct 13 11:49:10 2024 +0000 +++ b/COBRAxy/ras_to_bounds.xml Sun Oct 13 11:54:36 2024 +0000 @@ -31,7 +31,7 @@ #if $cond_ras.ras_choice == "True" --input_ras $cond_ras.input_ras #for $input_temp in $cond_ras.input_ras: - #set $names = $names + $input_temp.element_identifier + "," + #set $names = $names + $input_temp.element_identifier #end for #end if --name $names @@ -90,7 +90,7 @@ - RAS matrix: tab-separated RAS file as returned by RAS generator. Multiple RAS files can be uploaded too (e.g. one RAS matrix for normal cells and one for cancer cells). Note that if multiple RAs matrices are uploaded, the bounds are normalzed across all cells. - Medium: tab-separated file containing lower and upper-bounds of medium reactions. -Example of custum growth medium fileeeee: +Example of custum growth medium file: +------------+----------------+----------------+