# HG changeset patch # User luca_milaz # Date 1731950553 0 # Node ID a057458bfa4ed624a1107705ae6a7742e7a4252b # Parent 2be342a25cdb91c38078b5b716b5d04e48d76fc0 Uploaded diff -r 2be342a25cdb -r a057458bfa4e COBRAxy/flux_to_map.xml --- a/COBRAxy/flux_to_map.xml Mon Nov 18 17:20:03 2024 +0000 +++ b/COBRAxy/flux_to_map.xml Mon Nov 18 17:22:33 2024 +0000 @@ -154,10 +154,10 @@ - custom svg map. Graphical elements must have the same IDs of reactions. See HmrCore svg map for an example. The tool generates: - - 1) a tab-separated file: reporting fold-change and p-values of fluxes between a pair of conditions/classes; - - 2) a metabolic map file (downloadable as .svg and .png): visualizing up- and down-regulated reactions between a pair of conditions/classes; - - 3) two metabolic maps to visualize the mean and median fluxes normalized amongst all classes. The associated color map is also generated; - - 4) a log file (.txt). + - A tab-separated file: reporting fold-change and p-values of fluxes between a pair of conditions/classes; + - A metabolic map file (downloadable as .svg and .png): visualizing up- and down-regulated reactions between a pair of conditions/classes; + - Two metabolic maps to visualize the mean and median fluxes normalized amongst all classes. The associated color map is also generated; + - A log file (.txt). Output options: - To calculate P-Values and Fold-Changes and to enrich maps, comparisons are performed for each possible pair of groups (default option ‘One vs One’).