# HG changeset patch
# User luca_milaz
# Date 1728835046 0
# Node ID a7a079f6a4cdb918a0ce098e9731454ddf82dd18
# Parent  1961a091484c0b09e84b2feccb3ff42e63728f83
Uploaded

diff -r 1961a091484c -r a7a079f6a4cd COBRAxy/ras_to_bounds.py
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 15:55:16 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 15:57:26 2024 +0000
@@ -124,7 +124,7 @@
         None
     """
     for reaction in rxns_ids:
-        if reaction in ras_row.index and ras_row[reaction] not in mediumRxns_ids:
+        if reaction in ras_row.index and reaction not in mediumRxns_ids:
             scaling_factor = ras_row[reaction]
             lower_bound=model.reactions.get_by_id(reaction).lower_bound
             upper_bound=model.reactions.get_by_id(reaction).upper_bound
@@ -193,8 +193,6 @@
         model.reactions.get_by_id(reaction).lower_bound = float(df_FVA.loc[reaction, "minimum"])
         model.reactions.get_by_id(reaction).upper_bound = float(df_FVA.loc[reaction, "maximum"])
 
-    #warning(str(model.reactions.get_by_id("EX_Lcystin_e").lower_bound))
-
     if ras is not None:
         #Parallel(n_jobs=cpu_count())(delayed(process_ras_cell)(cellName, ras_row, model, rxns_ids, output_folder) for cellName, ras_row in ras.iterrows())
         for cellName, ras_row in ras.iterrows():