# HG changeset patch # User francesco_lapi # Date 1741102259 0 # Node ID bae18f67004c43c8d2df41be48063a61a4cbf656 # Parent a4f02ba0f64c7909622026c6d9872ac6b1a416d6 Uploaded diff -r a4f02ba0f64c -r bae18f67004c COBRAxy/ras_generator.py --- a/COBRAxy/ras_generator.py Tue Mar 04 15:27:22 2025 +0000 +++ b/COBRAxy/ras_generator.py Tue Mar 04 15:30:59 2025 +0000 @@ -28,7 +28,7 @@ parser.add_argument( '-rs', '--rules_selector', - type = utils.Model, default = utils.Model.HMRcore, choices = list(utils.Model), + type = utils.Model, default = utils.Model.ENGRO2, choices = list(utils.Model), help = 'chose which type of dataset you want use') parser.add_argument("-rl", "--rule_list", type = str, @@ -226,18 +226,16 @@ if gene_dup: if gene_custom == None: - print(args.rules_selector) - print(str(args.rules_selector) == 'ENGRO2') - if args.rules_selector == 'HMRcore': + if str(args.rules_selector) == 'HMRcore': print(1) gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb')) - elif args.rules_selector == 'Recon': + elif str(args.rules_selector) == 'Recon': print(2) gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) - elif args.rules_selector == 'ENGRO2': + elif str(args.rules_selector) == 'ENGRO2': print(3) gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))