# HG changeset patch
# User luca_milaz
# Date 1760004022 0
# Node ID c3c1d3b3941faf9bab471ebfca576aa76a98ad50
# Parent  c66aa96336d30032ae2d6a80a4e67732442d16ef
Uploaded

diff -r c66aa96336d3 -r c3c1d3b3941f COBRAxy/flux_simulation.xml
--- a/COBRAxy/flux_simulation.xml	Thu Oct 09 10:00:03 2025 +0000
+++ b/COBRAxy/flux_simulation.xml	Thu Oct 09 10:00:22 2025 +0000
@@ -17,7 +17,7 @@
         <![CDATA[
         python $__tool_directory__/flux_simulation.py
         --tool_dir $__tool_directory__
-        
+
         --model_and_bounds $model_and_bounds.model_and_bounds
         
         #if $model_and_bounds.model_and_bounds == 'True':
@@ -65,13 +65,31 @@
         #end if
         
         --out_log $log
-        --out_fluxes $fluxes_results
-        --out_mean $mean_results
-        --out_median $median_results
-        --out_quantiles $quantile_results
-        --out_fva $fva_results
-        --out_pfba $pFBA_results
-        --out_sensitivity $sensitivity_results
+
+        #if $sampling_params.sampling_enabled == 'true':
+            #if 'mean' in str($sampling_params.output_types):
+                --out_mean $mean_results
+            #end if
+            #if 'median' in str($sampling_params.output_types):
+                --out_median $median_results
+            #end if
+            #if 'quantiles' in str($sampling_params.output_types):
+                --out_quantiles $quantile_results
+            #end if
+            #if 'fluxes' in str($sampling_params.output_types):
+                --out_fluxes $fluxes_results
+            #end if
+        #end if
+        
+        #if 'FVA' in str($output_types_analysis):
+            --out_fva $fva_results
+        #end if
+        #if 'pFBA' in str($output_types_analysis):
+            --out_pfba $pFBA_results
+        #end if
+        #if 'sensitivity' in str($output_types_analysis):
+            --out_sensitivity $sensitivity_results
+        #end if
         ]]>
     </command>