# HG changeset patch
# User luca_milaz
# Date 1726660849 0
# Node ID deb6d3439342158bdf97551ba1a7ccc31b4a7a9e
# Parent  aaad8c11b7d6304cdbadfe78f0f231905bc803ae
Uploaded

diff -r aaad8c11b7d6 -r deb6d3439342 COBRAxy/custom_data_generator.xml
--- a/COBRAxy/custom_data_generator.xml	Wed Sep 18 11:02:44 2024 +0000
+++ b/COBRAxy/custom_data_generator.xml	Wed Sep 18 12:00:49 2024 +0000
@@ -43,7 +43,8 @@
 What it does
 -------------
 
-This tool generates two files containing reactions and rules respectively, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules.
+This tool generates four files containing reactions, rules, reaction bounds and medium composition respectively, starting from a custom model in JSON or XML format.
+Reactions and rules can be used as inputs for the RAS and RPS generator tools.
 
 Accepted files:
     - A model: JSON or XML file reporting reactions and rules contained in the model.   
@@ -55,6 +56,8 @@
 The tool generates:
     - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle.
     - reactions: reporting the reactions in the custom model given. Format: csv or pickle.
+    - reaction bounds: reporting the lower and upper bounds of each model reaction. Format: csv or pickle.
+    - medium composition: reporting the list of exchange/transport reactions. Format: csv or pickle.
     - a log file (.txt).
     ]]>
     </help>