Mercurial > repos > bimib > cobraxy

changeset 62:14076662f687 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 08:08:33 +0000
parents 455e8945d02a
children 5302258f8262
files COBRAxy/ras_to_bounds.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 08:05:26 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 08:08:33 2024 +0000
@@ -184,7 +184,9 @@
         rxn.upper_bound = float(df_FVA.loc[reaction, "maximum"])
 
     if ras is not None:
-        Parallel(n_jobs=cpu_count())(delayed(process_ras_cell)(cellName, ras_row, model, rxns_ids, output_folder) for cellName, ras_row in ras.iterrows())
+        #Parallel(n_jobs=cpu_count())(delayed(process_ras_cell)(cellName, ras_row, model, rxns_ids, output_folder) for cellName, ras_row in ras.iterrows())
+         for cellName, ras_row in ras.iterrows():
+            process_ras_cell(cellName, ras_row, model, rxns_ids, output_folder) 
     else:
         model_new = model.copy()
         apply_ras_bounds(model_new, pd.Series([1]*len(rxns_ids), index=rxns_ids), rxns_ids)