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changeset 111:22d2cf96d552 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 15:46:36 +0000
parents 76e87d3b9e0e
children 4ea14da7043b
files COBRAxy/ras_to_bounds.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 15:42:10 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 15:46:36 2024 +0000
@@ -177,12 +177,12 @@
     # Set medium conditions
     for reaction, value in medium.items():
         if value is not None:
-            warning(str(reaction) + " " + str(value))
             if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):
                 model.reactions.get_by_id(reaction).lower_bound = -float(value)
             if(reaction == "EX_lac__L_e"):
                 model.reactions.get_by_id(reaction).lower_bound = float(0.0)
             
+    warning(str(model.reactions.get_by_id("EX_Lcystin_e").lower_bound))
     
     # Perform Flux Variability Analysis (FVA)
     df_FVA = cobra.flux_analysis.flux_variability_analysis(model, fraction_of_optimum=0, processes=1).round(8)