Mercurial > repos > bimib > cobraxy
changeset 165:2be342a25cdb draft
Uploaded
| author | luca_milaz |
|---|---|
| date | Mon, 18 Nov 2024 17:20:03 +0000 |
| parents | 929104dceba8 |
| children | a057458bfa4e |
| files | COBRAxy/flux_to_map.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/COBRAxy/flux_to_map.xml Mon Nov 18 17:17:02 2024 +0000 +++ b/COBRAxy/flux_to_map.xml Mon Nov 18 17:20:03 2024 +0000 @@ -156,11 +156,11 @@ The tool generates: - 1) a tab-separated file: reporting fold-change and p-values of fluxes between a pair of conditions/classes; - 2) a metabolic map file (downloadable as .svg and .png): visualizing up- and down-regulated reactions between a pair of conditions/classes; - - 3) two metabolic maps to visualize the mean and median fluxes normalized amongst all classes. The associated color map is also generated. + - 3) two metabolic maps to visualize the mean and median fluxes normalized amongst all classes. The associated color map is also generated; - 4) a log file (.txt). - + Output options: -To calculate P-Values and Fold-Changes and to enrich maps, comparisons are performed for each possible pair of groups (default option ‘One vs One’). + - To calculate P-Values and Fold-Changes and to enrich maps, comparisons are performed for each possible pair of groups (default option ‘One vs One’). Alternative options are: - comparison of each group vs. the rest of samples (option ‘One vs Rest’)