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changeset 211:4e368ecd4fb6 draft

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Uploaded
author francesco_lapi
date Thu, 28 Nov 2024 15:41:30 +0000
parents 3ca179b83574
children 60448f3c8c95
files COBRAxy/flux_to_map.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/flux_to_map.py	Thu Nov 28 14:07:11 2024 +0000
+++ b/COBRAxy/flux_to_map.py	Thu Nov 28 15:41:30 2024 +0000
@@ -727,7 +727,7 @@
             avg2 = sum(l2) / len(l2)
             f_c = fold_change(avg1, avg2)
             if not isinstance(z_score, str) and max_z_score < abs(z_score): max_z_score = abs(z_score)
-            print(reactId, 'pValue ', float(p_value), 'fold change ', f_c, 'z_score ', z_score, 'avg1 ', avg1, 'avg2 ', avg2)
+            
             tmp[reactId] = [float(p_value), f_c, z_score, avg1, avg2]
         except (TypeError, ZeroDivisionError): continue
     
@@ -759,14 +759,14 @@
     
     if ARGS.comparison == "manyvsmany":
         for i, j in it.combinations(class_pat.keys(), 2):
-            print(f"Comparing {i} and {j}")
+
             comparisonDict, max_z_score = compareDatasetPair(class_pat.get(i), class_pat.get(j), ids)
             enrichment_results.append((i, j, comparisonDict, max_z_score))
     
     elif ARGS.comparison == "onevsrest":
         for single_cluster in class_pat.keys():
             rest = [item for k, v in class_pat.items() if k != single_cluster for item in v]
-            print(f"Comparing {single_cluster} and {rest}")
+
             comparisonDict, max_z_score = compareDatasetPair(class_pat.get(single_cluster), rest, ids)
             enrichment_results.append((single_cluster, "rest", comparisonDict, max_z_score))