Mercurial > repos > bimib > cobraxy

changeset 528:698802db290d draft default tip

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Uploaded
author luca_milaz
date Tue, 21 Oct 2025 09:49:31 +0000
parents a9191eb88e69
children
files COBRAxy/metabolicModel2Tabular.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/metabolicModel2Tabular.py	Tue Oct 21 09:49:03 2025 +0000
+++ b/COBRAxy/metabolicModel2Tabular.py	Tue Oct 21 09:49:31 2025 +0000
@@ -247,7 +247,7 @@
     
     if ARGS.name == "ENGRO2" and ARGS.medium_selector != "Default":
         df_mediums = pd.read_csv(ARGS.tool_dir + "/local/medium/medium.csv", index_col = 0)
-        ARGS.medium_selector = ARGS.medium_selector.replace("_", " ")
+        #ARGS.medium_selector = ARGS.medium_selector.replace("_", " ") medium.csv uses underscores now
         medium = df_mediums[[ARGS.medium_selector]]
         medium = medium[ARGS.medium_selector].to_dict()