changeset 206:84edff2086d7 draft

Uploaded
author francesco_lapi
date Tue, 26 Nov 2024 15:08:50 +0000
parents 8b9f263f924e
children 8496aeba6351
files COBRAxy/local/svg metabolic maps/ENGRO2_map.svg
diffstat 1 files changed, 53 insertions(+), 42 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg	Tue Nov 26 10:17:17 2024 +0000
+++ b/COBRAxy/local/svg metabolic maps/ENGRO2_map.svg	Tue Nov 26 15:08:50 2024 +0000
@@ -31,15 +31,15 @@
      inkscape:pagecheckerboard="0"
      inkscape:deskcolor="#d1d1d1"
      showgrid="true"
-     inkscape:zoom="0.68739635"
-     inkscape:cx="1593.6948"
-     inkscape:cy="972.51026"
+     inkscape:zoom="0.97212524"
+     inkscape:cx="492.22053"
+     inkscape:cy="2016.7155"
      inkscape:window-width="1920"
      inkscape:window-height="1017"
      inkscape:window-x="-8"
      inkscape:window-y="-8"
      inkscape:window-maximized="1"
-     inkscape:current-layer="ENGRO2_2"
+     inkscape:current-layer="svg5792"
      showguides="true">
     <inkscape:grid
        id="grid1"
@@ -969,7 +969,8 @@
            d="m 124.08177,1639.5051 c 9.72386,-2.765 9.72386,-2.765 9.72386,-2.765 l -9.66708,-2.9745 2.3956,2.8947 z m -50.041733,-18.5362 c -2.207443,-6.8775 -2.207443,-6.8775 -2.207443,-6.8775 l -2.315717,6.8475 2.274977,-1.6969 z"
            fill="#2b0000"
            stroke="#000000"
-           stroke-width="2.66667" />
+           stroke-width="2.66667"
+           style="fill:none" />
         <text
            id="text1162-7-8"
            transform="scale(0.99895309,1.001048)"
@@ -1050,7 +1051,7 @@
            fill="#2b0000"
            stroke="#000000"
            stroke-width="2.66667"
-           style="fill:#000000" />
+           style="fill:none" />
         <text
            id="text1154-6"
            fill="#2b0000"
@@ -1124,7 +1125,7 @@
            fill="#2b0000"
            stroke="#000000"
            stroke-width="2.66667"
-           style="fill:#000000" />
+           style="fill:none" />
         <text
            id="text1303"
            fill="#2b0000"
@@ -1207,7 +1208,7 @@
            fill="#2b0000"
            stroke="#000000"
            stroke-width="2.66667"
-           style="fill:#000000" />
+           style="fill:none" />
         <text
            id="text1162"
            transform="translate(0.0339355,1427.03)"
@@ -2455,7 +2456,8 @@
          d="M 379.344,1814 C 370,1812.09 370,1812.09 370,1812.09 l 9.203,-2.35 -2.248,2.18 z m 12.836,-13.37 c 3.192,-9.63 3.192,-9.63 3.192,-9.63 l 2.558,9.82 -2.796,-2.52 z"
          fill="#2b0000"
          stroke="#000000"
-         stroke-width="2.23952" />
+         stroke-width="2.23952"
+         style="fill:none" />
       <path
          d="m 374,1812.9 c 12.949,-3.62 21.246,4.68 21.246,4.68 m -0.283,4.43 c -1.657,7.16 -18.968,6.57 -18.968,6.57 m 18.976,-29.58 0.137,46.36"
          stroke="#000000"
@@ -2585,7 +2587,8 @@
          d="m 398.353,1716.59 c -3.404,-9.56 -3.404,-9.56 -3.404,-9.56 l -2.34,9.88 2.739,-2.59 z m -19.592,12.24 c -9.327,2 -9.327,2 -9.327,2 l 9.224,2.26 -2.267,-2.16 z"
          fill="#2b0000"
          stroke="#000000"
-         stroke-width="2.23952" />
+         stroke-width="2.23952"
+         style="fill:none" />
       <path
          d="m 395.845,1760.82 -0.275,-46.36 m 0.062,23.35 c -1.721,-7.15 -19.026,-6.4 -19.026,-6.4 m -1.855,15.7 c 12.98,3.5 21.204,-4.88 21.204,-4.88"
          stroke="#000000"
@@ -2796,7 +2799,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_9"
-           d="M 2344.191,2079 H 2546.5 c 6.63,0 12,5.37 12,12 v 109 c 0,6.63 -5.37,12 -12,12 H 2097 c -6.63,0 -12,-5.37 -12,-12 v -109 c 0,-6.63 5.37,-12 12,-12 h 8.5"
+           d="M 2350.2145,2079 H 2546.5 c 6.63,0 12,5.37 12,12 v 109 c 0,6.63 -5.37,12 -12,12 H 2097 c -6.63,0 -12,-5.37 -12,-12 v -109 c 0,-6.63 5.37,-12 12,-12 h 8.5"
            stroke="#aeaeae"
            stroke-width="4"
            stroke-linecap="round"
@@ -2815,7 +2818,7 @@
              id="tspan763">Glutathione synthesis</tspan></text>
         <circle
            id="Ellipse 1_9"
-           cx="2344.0391"
+           cx="2350.0625"
            cy="2079"
            r="6"
            fill="#aeaeae" />
@@ -3766,7 +3769,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_4"
-           d="M 1878.778,705 H 2345.5 c 6.63,0 12,5.373 12,12 v 246.5 c 0,6.627 -5.37,12 -12,12 H 1511 c -6.63,0 -12,-5.373 -12,-12 V 717 c 0,-6.627 5.37,-12 12,-12 h 8.5"
+           d="M 1884.8015,705 H 2345.5 c 6.63,0 12,5.373 12,12 v 246.5 c 0,6.627 -5.37,12 -12,12 H 1511 c -6.63,0 -12,-5.373 -12,-12 V 717 c 0,-6.627 5.37,-12 12,-12 h 8.5"
            stroke="#cbe048"
            stroke-width="4"
            stroke-linecap="round"
@@ -3785,7 +3788,7 @@
              id="tspan728">Fatty acids / Cholesterol synthesis</tspan></text>
         <circle
            id="Ellipse 1_4"
-           cx="1879.0391"
+           cx="1885.0625"
            cy="705"
            r="6"
            fill="#cbe048" />
@@ -4847,7 +4850,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_6"
-           d="m 1668.5901,1096.2271 h 167.9764 c 6.63,0 9.4335,6.1429 9.4335,12.7729 v 63.5 c 0,6.63 -5.37,12 -12,12 h -357 c -6.63,0 -12,-5.37 -12,-12 V 1109 c 0,-6.63 5.37,-12 12,-12 h 12.5"
+           d="m 1674.6136,1096.2271 h 161.9529 c 6.63,0 9.4335,6.1429 9.4335,12.7729 v 63.5 c 0,6.63 -5.37,12 -12,12 h -357 c -6.63,0 -12,-5.37 -12,-12 V 1109 c 0,-6.63 5.37,-12 12,-12 h 12.5"
            stroke="#c19c91"
            stroke-width="4"
            stroke-linecap="round"
@@ -4866,7 +4869,7 @@
              id="tspan742">Ammonia detox </tspan></text>
         <circle
            id="Ellipse 1_6"
-           cx="1669.0391"
+           cx="1675.0625"
            cy="1097"
            r="6"
            fill="#c19c91" />
@@ -9726,7 +9729,8 @@
            fill-rule="evenodd"
            clip-rule="evenodd"
            d="m 1384.57,932.624 6.19,20.898 -6.3,-5.514 -6.78,5.271 z m -2.25,14.098 2.22,-1.73 1.7,1.487 -1.81,-6.103 z m -106.98,45.696 -1.13,3.009 1.13,1.532 z m -2.38,-0.281 2.45,-6.545 2.25,0.408 v 18.04 l -9.1,-12.349 1.64,-1.622 z m -142.58,541.553 -4.01,5.22 4.12,5.14 -16.33,-5 z m -8.54,5.27 2.1,0.65 -0.53,-0.66 0.52,-0.68 z"
-           fill="#000000" />
+           fill="#000000"
+           style="fill:none;stroke:#000000;stroke-opacity:1;stroke-width:2.20330762;stroke-dasharray:none" />
         <path
            id="B_HMR_4964"
            fill-rule="evenodd"
@@ -9815,9 +9819,10 @@
         </g>
         <path
            id="R_HMR_4964"
-           d="m 1384,940.5 v 36 c 0,0 -68.26,0 -132,0 m -87.26,270.44 V 1333 m 0,-86.06 c 51.26,0 51.26,80.06 51.26,80.06 0,0 6.39,2.02 6.5,6 0.11,3.82 -6.5,10 -6.5,10 v 194.47 h -91.5 m 40.24,-290.53 v -45.44 m 0,0 c 8.76,-4.5 14.26,4.5 14.26,4.5 m -14.26,-4.5 v -225 c 0,0 22.71,0 37.26,0 m 0,0 c 16,0 16,21.5 16,21.5 m -16,-21.5 c 15.32,0 32.49,0 50,0 m 0,0 c 21.5,0 22.5,21.5 22.5,21.5"
-           stroke="#000000"
-           stroke-width="2.5538" />
+           d="m 1384,948.15142 0,28.34858 h -132 m -87.26,270.44 V 1333 m 0,-86.06 c 51.26,0 51.26,80.06 51.26,80.06 0,0 6.39,2.02 6.5,6 0.11,3.82 -6.5,10 -6.5,10 v 194.47 h -91.5 m 40.24,-290.53 v -45.44 m 0,0 c 8.76,-4.5 14.26,4.5 14.26,4.5 m -14.26,-4.5 v -225 H 1202 m 0,0 c 16,0 16,21.5 16,21.5 m -16,-21.5 h 50 m 0,0 c 21.5,0 20.6744,15.12381 20.6744,15.12381"
+           stroke="#000000"
+           stroke-width="2.5538"
+           sodipodi:nodetypes="cccccccccccccccccccccccc" />
         <g
            id="Group 54">
           <path
@@ -10970,7 +10975,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_5"
-           d="M 1649.8105,485 1826,485 c 6.63,0 12,5.373 12,12 v 160 c 0,6.627 -5.37,12 -12,12 h -315 c -6.63,0 -12,-5.373 -12,-12 V 497 c 0,-6.627 5.37,-12 12,-12 h 8.5"
+           d="M 1651.8183,485 H 1826 c 6.63,0 12,5.373 12,12 v 160 c 0,6.627 -5.37,12 -12,12 h -315 c -6.63,0 -12,-5.373 -12,-12 V 497 c 0,-6.627 5.37,-12 12,-12 h 8.5"
            stroke="#c19c91"
            stroke-width="4"
            stroke-linecap="round"
@@ -10989,7 +10994,7 @@
              id="tspan735">Urea cycle</tspan></text>
         <circle
            id="Ellipse 1_5"
-           cx="1650.0391"
+           cx="1652.0469"
            cy="485"
            r="6"
            fill="#c19c91" />
@@ -11213,7 +11218,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_8"
-           d="M 1574.0392,1737 H 1835 c 6.63,0 12,5.37 12,12 v 84.5 c 0,6.63 -5.37,12 -12,12 h -516 c -6.63,0 -12,-5.37 -12,-12 V 1749 c 0,-6.63 5.37,-12 12,-12 h 8.5"
+           d="M 1580.0627,1737 H 1835 c 6.63,0 12,5.37 12,12 v 84.5 c 0,6.63 -5.37,12 -12,12 h -516 c -6.63,0 -12,-5.37 -12,-12 V 1749 c 0,-6.63 5.37,-12 12,-12 h 8.5"
            stroke="#cbe048"
            stroke-width="4"
            stroke-linecap="round"
@@ -11232,7 +11237,7 @@
              id="tspan756">Fatty acids β-oxidation </tspan></text>
         <circle
            id="Ellipse 1_8"
-           cx="1574.0391"
+           cx="1580.0625"
            cy="1737"
            r="6"
            fill="#cbe048" />
@@ -14266,7 +14271,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_3"
-           d="M 1139.9372,93 1750.5,93 c 6.63,0 12,5.3726 12,12 v 332 c 0,6.627 -5.37,12 -12,12 H 902 c -6.627,0 -12,-5.373 -12,-12 V 105 c 0,-6.6274 5.373,-12 12,-12 h 8.5"
+           d="M 1145.9607,93 H 1750.5 c 6.63,0 12,5.3726 12,12 v 332 c 0,6.627 -5.37,12 -12,12 H 902 c -6.627,0 -12,-5.373 -12,-12 V 105 c 0,-6.6274 5.373,-12 12,-12 h 8.5"
            stroke="#29bc90"
            stroke-width="4"
            stroke-linecap="round"
@@ -14285,7 +14290,7 @@
              id="tspan721">Nucleotide synthesis</tspan></text>
         <circle
            id="Ellipse 1_3"
-           cx="1140.0391"
+           cx="1146.0625"
            cy="93"
            r="6"
            fill="#29bc90" />
@@ -15326,24 +15331,26 @@
            id="text5529"
            fill="#2b0000"
            xml:space="preserve"
-           style="white-space:pre"
+           style="white-space:pre;fill:#000000"
            font-family="Arial"
            font-size="12px"
            letter-spacing="0em"><tspan
              x="1576.16"
              y="141.16"
-             id="tspan2020">ADP</tspan></text>
+             id="tspan2020"
+             style="fill:#000000">ADP</tspan></text>
         <text
            id="text5537"
            fill="#2b0000"
            xml:space="preserve"
-           style="white-space:pre"
+           style="white-space:pre;fill:#000000"
            font-family="Arial"
            font-size="12px"
            letter-spacing="0em"><tspan
              x="1551.27"
              y="141.16"
-             id="tspan2023">ATP</tspan></text>
+             id="tspan2023"
+             style="fill:#000000">ATP</tspan></text>
         <text
            id="text5543"
            fill="#000000"
@@ -16087,7 +16094,8 @@
            d="m 1567.52,150.716 c 1.61,-6.716 1.61,-6.716 1.61,-6.716 l 2.24,6.524 -2,-1.559 z m -7.99,14.514 c -7.53,-2.416 -7.53,-2.416 -7.53,-2.416 l 7.63,-2.065 -1.94,2.197 z"
            fill="#2b0000"
            stroke="#000000"
-           stroke-width="1.95125" />
+           stroke-width="1.95125"
+           style="fill:none" />
         <path
            id="F_NDPK5"
            fill-rule="evenodd"
@@ -16106,24 +16114,26 @@
            id="text4686"
            fill="#2b0000"
            xml:space="preserve"
-           style="white-space:pre"
+           style="white-space:pre;fill:#000000"
            font-family="Arial"
            font-size="12px"
            letter-spacing="0em"><tspan
              x="1570.16"
              y="184.16"
-             id="tspan2242">ADP</tspan></text>
+             id="tspan2242"
+             style="fill:#000000">ADP</tspan></text>
         <text
            id="text4690"
            fill="#2b0000"
            xml:space="preserve"
-           style="white-space:pre"
+           style="white-space:pre;fill:#000000"
            font-family="Arial"
            font-size="12px"
            letter-spacing="0em"><tspan
              x="1544.27"
              y="184.16"
-             id="tspan2245">ATP</tspan></text>
+             id="tspan2245"
+             style="fill:#000000">ATP</tspan></text>
         <text
            id="text4694"
            fill="#000000"
@@ -16216,7 +16226,7 @@
            fill-opacity="0.1" />
         <path
            id="Rectangle 2_2"
-           d="M 672.198,158 H 854 c 6.627,0 12,5.373 12,12 v 264.5 c 0,6.627 -5.373,12 -12,12 H 362 c -6.627,0 -12,-5.373 -12,-12 V 170 c 0,-6.627 5.373,-12 12,-12 h 8.5"
+           d="M 678.22153,158 H 854 c 6.627,0 12,5.373 12,12 v 264.5 c 0,6.627 -5.373,12 -12,12 H 362 c -6.627,0 -12,-5.373 -12,-12 V 170 c 0,-6.627 5.373,-12 12,-12 h 8.5"
            stroke="#841bd7"
            stroke-width="4"
            stroke-linecap="round"
@@ -16235,7 +16245,7 @@
              id="tspan714">Pentose Phosphate pathway</tspan></text>
         <circle
            id="Ellipse 1_2"
-           cx="672.03937"
+           cx="678.06299"
            cy="158"
            r="6"
            fill="#841bd7" />
@@ -16861,7 +16871,7 @@
              id="tspan770">Glycolysis / Gluconeogenesis</tspan></text>
         <circle
            id="Ellipse 1_10"
-           cx="408.01816"
+           cx="414.02905"
            cy="104"
            r="6"
            transform="matrix(0,1,1,0,0,0)"
@@ -17983,9 +17993,10 @@
                id="tspan4883">ADP</tspan></text>
           <path
              id="R_ACITL"
-             d="m 1381.29,910.507 c 0,0 0.11,-32.004 0,-65.007 0,0 11.03,0 15.71,0 m 24.5,0 c 0,0 -14.54,10e-4 -24.5,0 m -269,12 h 253.12 c 0.04,13 22.47,13.856 22.47,13.856 m -22.35,16.168 c 2.7,9.857 21.98,8.663 21.98,8.663 m -22.12,-44.688 c -0.06,-17.5 -17.9,-12.398 -17.9,-12.398 m 33.8,6.399 c -0.5,-15 -12,-15 -12,-15"
-             stroke="#000000"
-             stroke-width="2.37609" />
+             d="m 1381.29,910.507 c 0,0 0.11,-32.004 0,-65.007 H 1397 m 24.5,0 c 0,0 -14.54,10e-4 -24.5,0 m -262.9764,12 H 1381.12 c 0.04,13 22.47,13.856 22.47,13.856 m -22.35,16.168 c 2.7,9.857 21.98,8.663 21.98,8.663 m -22.12,-44.688 c -0.06,-17.5 -17.9,-12.398 -17.9,-12.398 m 33.8,6.399 c -0.5,-15 -12,-15 -12,-15"
+             stroke="#000000"
+             stroke-width="2.37609"
+             sodipodi:nodetypes="cccccccccccccc" />
           <text
              id="text7039-4-5"
              fill="#000000"
@@ -18003,7 +18014,7 @@
              fill-rule="evenodd"
              clip-rule="evenodd"
              d="m 1377.53,823.782 12.35,4.119 -4.72,1.887 v 4.904 z m -9.81,9.565 -3.97,5.249 4.15,5.11 -16.36,-4.902 z m -8.51,5.326 2.11,0.632 -0.53,-0.659 0.51,-0.677 z m 55.22,2.304 14.09,4.403 -15.74,6.119 4.33,-6.055 z m 5.14,4.046 0.32,0.533 -0.67,0.945 2.26,-0.881 z m -282.96,7.381 1.12,2.005 -4.05,3.234 5.78,6.493 -20.36,-5.48 z m -9.71,5.94 5.64,1.52 -2.22,-2.507 0.52,-0.423 z"
-             fill="#000000" />
+             style="stroke:#000000;stroke-opacity:1;stroke-width:0;stroke-dasharray:none" />
         </g>
         <text
            id="text7967-0-3-9-1-2-1-3-75-6"