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comparison Marea/marea_cluster.xml @ 2:3b3d0e5d0802 draft

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Uploaded
author bimib
date Wed, 07 Nov 2018 07:16:37 -0500
parents 9e63d5f02d62
children 02577e65dcca
comparison
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1:9e63d5f02d62 2:3b3d0e5d0802
1 <tool id="MaREA_cluester" name="MaREA cluster analysis"> 1 <tool id="MaREA_cluester" name="MaREA cluster analysis">
2 <description>of Reaction Activity Scores</description> 2 <description>of Reaction Activity Scores</description>
3 <macros> 3 <macros>
4 <import>marea_macros.xml</import> 4 <import>marea_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" />
7 <requirements> 6 <requirements>
7 <requirement type="package">pandas</requirement>
8 <requirement type="package">scipy</requirement>
9 <requirement type="package">cobrapy</requirement>
10 <requirement type="package">python-libsbml</requirement>
8 <requirement type="package">scikit-learn</requirement> 11 <requirement type="package">scikit-learn</requirement>
9 <requirement type="package">matplotlib</requirement> 12 <requirement type="package">matplotlib</requirement>
10 </requirements> 13 </requirements>
11 <command> 14 <command>
12 <![CDATA[ 15 <![CDATA[
30 --elbow $elbow 33 --elbow $elbow
31 ]]> 34 ]]>
32 </command> 35 </command>
33 <inputs> 36 <inputs>
34 <conditional name="cond_rule"> 37 <conditional name="cond_rule">
35 <expand macro="options" /> 38 <expand macro="options"/>
36 <when value="Custom"> 39 <when value="Custom">
37 <param name="Custom_rules" type="data" format="tabular, csv, tsv, xml" label="Custom rules" /> 40 <param name="Custom_rules" type="data" format="tabular, csv, tsv, xml" label="Custom rules" />
38 </when> 41 </when>
39 </conditional> 42 </conditional>
40 <param name="input" argument="--data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" /> 43 <param name="input" argument="--data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" />