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comparison Marea/marea.xml @ 67:3dfffeac4e57 draft

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author bimib
date Mon, 16 Mar 2020 09:08:52 -0400
parents 858500ec9767
children aa09186cbc9f
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66:858500ec9767 67:3dfffeac4e57
1 <tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.5"> 1 <tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.6">
2 <macros> 2 <macros>
3 <import>marea_macros.xml</import> 3 <import>marea_macros.xml</import>
4 </macros> 4 </macros>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.23.0">pandas</requirement> 6 <requirement type="package" version="0.23.0">pandas</requirement>
105 <param name="cond_map_choice" type="boolean" checked="false" label="Use custom map?" help="Use this option only if you have generated RAS using a custom set of rules"> 105 <param name="cond_map_choice" type="boolean" checked="false" label="Use custom map?" help="Use this option only if you have generated RAS using a custom set of rules">
106 <option value="false" selected="true">No</option> 106 <option value="false" selected="true">No</option>
107 <option value="true">Yes</option> 107 <option value="true">Yes</option>
108 </param> 108 </param>
109 <when value="true"> 109 <when value="true">
110 <param name="Custom_map" argument="--custom_map" type="data" format="xml, svg" label="custom-map.svg"/> 110 <param name="custom_map" argument="--custom_map" type="data" format="xml, svg" label="custom-map.svg"/>
111 </when> 111 </when>
112 </conditional> 112 </conditional>
113 <param name="pValue" argument="--pValue" type="float" size="20" value="0.01" max="1" min="0" label="P-value threshold:" help="min value 0" /> 113 <param name="pValue" argument="--pValue" type="float" size="20" value="0.01" max="1" min="0" label="P-value threshold:" help="min value 0" />
114 <param name="fChange" argument="--fChange" type="float" size="20" value="1.2" min="1" label="Fold-Change threshold:" help="min value 1" /> 114 <param name="fChange" argument="--fChange" type="float" size="20" value="1.2" min="1" label="Fold-Change threshold:" help="min value 1" />
115 <param name="generateSvg" argument="--generateSvg" type="boolean" checked="false" label="Generate SVG map" help="should the program generate an editable svg map of the processes?" /> 115 <param name="generateSvg" argument="--generateSvg" type="boolean" checked="false" label="Generate SVG map" help="should the program generate an editable svg map of the processes?" />