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comparison Marea/marea_cluster.xml @ 24:69ed2562e81e draft

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author bimib
date Wed, 02 Oct 2019 08:24:14 -0400
parents 52c29033607c
children 8c480c977a12
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23:a8825e66c3a0 24:69ed2562e81e
1 <tool id="MaREA_cluester" name="MaREA cluster analysis" version="1.0.2"> 1 <tool id="MaREA_cluester" name="MaREA cluster analysis" version="1.0.3">
2 <description>of Reaction Activity Scores - 1.0.2</description> 2 <description>of Reaction Activity Scores - 1.0.3</description>
3 <macros> 3 <macros>
4 <import>marea_macros.xml</import> 4 <import>marea_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.25.1">pandas</requirement> 7 <requirement type="package" version="0.25.1">pandas</requirement>
15 <![CDATA[ 15 <![CDATA[
16 python $__tool_directory__/marea_cluster.py 16 python $__tool_directory__/marea_cluster.py
17 --input $input 17 --input $input
18 --tool_dir $__tool_directory__ 18 --tool_dir $__tool_directory__
19 --out_log $log 19 --out_log $log
20 --cluster_type ${data.clust_type}
20 #if $data.clust_type == 'kmeans': 21 #if $data.clust_type == 'kmeans':
21 --k_min ${data.k_min} 22 --k_min ${data.k_min}
22 --k_max ${data.k_max} 23 --k_max ${data.k_max}
23 --elbow ${data.elbow} 24 --elbow ${data.elbow}
24 --silhouette ${data.silhouette} 25 --silhouette ${data.silhouette}