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comparison Marea/marea.xml @ 62:ce8534417470 draft

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Uploaded
author bimib
date Sun, 15 Mar 2020 12:26:38 -0400
parents ecc24ecafa11
children b8cbc2122d55
comparison
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61:69dfed656e0b 62:ce8534417470
1 <tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.3"> 1 <tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.4">
2 <macros> 2 <macros>
3 <import>marea_macros.xml</import> 3 <import>marea_macros.xml</import>
4 </macros> 4 </macros>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.23.0">pandas</requirement> 6 <requirement type="package" version="0.23.0">pandas</requirement>
26 --names 26 --names
27 #for $data in $cond.input_Datasets: 27 #for $data in $cond.input_Datasets:
28 ${data.input_name} 28 ${data.input_name}
29 #end for 29 #end for
30 --comparison ${cond.comparis.comparison} 30 --comparison ${cond.comparis.comparison}
31 #if $cond.advanced.cond_map.cond_map_choice == 'true': 31
32 --custom_rules true
33 --custom_map ${cond.advanced.cond_map.custom_map}
34 #end if
35 #if $cond.advanced.choice == 'true': 32 #if $cond.advanced.choice == 'true':
33 #if $cond.advanced.cond_map.cond_map_choice == 'true':
34 --custom_rules true
35 --custom_map ${cond.advanced.cond_map.custom_map}
36 #end if
36 --pValue ${cond.advanced.pValue} 37 --pValue ${cond.advanced.pValue}
37 --fChange ${cond.advanced.fChange} 38 --fChange ${cond.advanced.fChange}
38 --generate_svg ${cond.advanced.generateSvg} 39 --generate_svg ${cond.advanced.generateSvg}
39 --generate_pdf ${cond.advanced.generatePdf} 40 --generate_pdf ${cond.advanced.generatePdf}
40 #else 41 #else
49 --input_class ${input_class} 50 --input_class ${input_class}
50 --comparison ${cond.comparis.comparison} 51 --comparison ${cond.comparis.comparison}
51 #if $cond.comparis.comparison == 'onevsmany' 52 #if $cond.comparis.comparison == 'onevsmany'
52 --control ${cond.comparis.controlgroup} 53 --control ${cond.comparis.controlgroup}
53 #end if 54 #end if
54 #if $cond.advanced.cond_map.cond_map_choice == 'true':
55 --custom_rules true
56 --custom_map ${cond.advanced.cond_map.custom_map}
57 #end if
58 #if $cond.advanced.choice == 'true': 55 #if $cond.advanced.choice == 'true':
56 #if $cond.advanced.cond_map.cond_map_choice == 'true':
57 --custom_rules true
58 --custom_map ${cond.advanced.cond_map.custom_map}
59 #end if
59 --pValue ${cond.advanced.pValue} 60 --pValue ${cond.advanced.pValue}
60 --fChange ${cond.advanced.fChange} 61 --fChange ${cond.advanced.fChange}
61 --generate_svg ${cond.advanced.generateSvg} 62 --generate_svg ${cond.advanced.generateSvg}
62 --generate_pdf ${cond.advanced.generatePdf} 63 --generate_pdf ${cond.advanced.generatePdf}
63 #else 64 #else