Mercurial > repos > bimib > marea

comparison Marea/marea.xml @ 4:cf3d3d8f4ef5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Modifica a xml
author bimib
date Tue, 13 Nov 2018 07:34:43 -0500
parents 02577e65dcca
children 146cb8e171b8
comparison
equal deleted inserted replaced
3:02577e65dcca 4:cf3d3d8f4ef5
1 <tool id="MaREA" name="Metabolic Enrichment Analysis"> 1 <tool id="MaREA" name="Metabolic Enrichment Analysis" version="1.0.0">
2 <description>for Galaxy</description> 2 <description>for Galaxy</description>
3 <macros> 3 <macros>
4 <import>marea_macros.xml</import> 4 <import>marea_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
71 <param name="type_selector" argument="--option" type="select" label="Input format:"> 71 <param name="type_selector" argument="--option" type="select" label="Input format:">
72 <option value="datasets" selected="true">RNAseq of group 1 + RNAseq of group 2 + ... + RNAseq of group N</option> 72 <option value="datasets" selected="true">RNAseq of group 1 + RNAseq of group 2 + ... + RNAseq of group N</option>
73 <option value="dataset_class">RNAseq of all samples + sample group specification</option> 73 <option value="dataset_class">RNAseq of all samples + sample group specification</option>
74 </param> 74 </param>
75 <when value="datasets"> 75 <when value="datasets">
76 <repeat name="input_Datasets" title="RNAseq" type="data" min="2"> 76 <repeat name="input_Datasets" title="RNAseq" min="2">
77 <param name="input" argument="--input_datas" type="data" format="tabular, csv, tsv" label="add dataset" /> 77 <param name="input" argument="--input_datas" type="data" format="tabular, csv, tsv" label="add dataset" />
78 <param name="input_name" argument="--names" type="text" label="Dataset's name:" value="Dataset" help="Defalut: Dataset" /> 78 <param name="input_name" argument="--names" type="text" label="Dataset's name:" value="Dataset" help="Defalut: Dataset" />
79 </repeat> 79 </repeat>
80 </when> 80 </when>
81 <when value="dataset_class"> 81 <when value="dataset_class">
82 <param name="input_data" argument="--input_data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" /> 82 <param name="input_data" argument="--input_data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" />
83 <param name="input_class" argument="--input_class" type="data" format="tabular, csv, tsv" label="Sample group specification" /> 83 <param name="input_class" argument="--input_class" type="data" format="tabular, csv, tsv" label="Sample group specification" />
84 </when> 84 </when>
100 </collection> 100 </collection>
101 <collection name="table_out" type="list" label="Tabular results"> 101 <collection name="table_out" type="list" label="Tabular results">
102 <discover_datasets pattern="__name_and_ext__" directory="table_out" /> 102 <discover_datasets pattern="__name_and_ext__" directory="table_out" />
103 </collection> 103 </collection>
104 </outputs> 104 </outputs>
105 105 <tests>
106 106 <test>
107 107 <param name="pValue" value="0.56"/>
108 <output name="log" file="log.txt"/>
109 </test>
110 </tests>
108 <help> 111 <help>
109 <![CDATA[ 112 <![CDATA[
110 113
111 What it does 114 What it does
112 ------------- 115 -------------