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comparison Marea/marea.xml @ 59:d4bc7c7882c3 draft

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author bimib
date Sun, 15 Mar 2020 11:42:42 -0400
parents 959a9cb7816a
children ecc24ecafa11
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58:959a9cb7816a 59:d4bc7c7882c3
1 <tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.1"> 1 <tool id="MaREA" name="Metabolic Reaction Enrichment Analysis" version="1.1.2">
2 <macros> 2 <macros>
3 <import>marea_macros.xml</import> 3 <import>marea_macros.xml</import>
4 </macros> 4 </macros>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.23.0">pandas</requirement> 6 <requirement type="package" version="0.23.0">pandas</requirement>
137 <param name="cond_map_choice" type="boolean" checked="false" label="Use custom map?" help="Use this option only if you have generated RAS using a custom set of rules"> 137 <param name="cond_map_choice" type="boolean" checked="false" label="Use custom map?" help="Use this option only if you have generated RAS using a custom set of rules">
138 <option value="false" selected="true">No</option> 138 <option value="false" selected="true">No</option>
139 <option value="true">Yes</option> 139 <option value="true">Yes</option>
140 </param> 140 </param>
141 <when value="true"> 141 <when value="true">
142 <param name="Custom_map" argument="--custom_map" type="data" format="xml, svg" label="custom-map.svg"/> 142 <param name="custom_map" argument="--custom_map" type="data" format="xml, svg" label="custom-map.svg"/>
143 </when> 143 </when>
144 </conditional> 144 </conditional>
145 <param name="pValue" argument="--pValue" type="float" size="20" value="0.01" max="1" min="0" label="P-value threshold:" help="min value 0" /> 145 <param name="pValue" argument="--pValue" type="float" size="20" value="0.01" max="1" min="0" label="P-value threshold:" help="min value 0" />
146 <param name="fChange" argument="--fChange" type="float" size="20" value="1.2" min="1" label="Fold-Change threshold:" help="min value 1" /> 146 <param name="fChange" argument="--fChange" type="float" size="20" value="1.2" min="1" label="Fold-Change threshold:" help="min value 1" />
147 <param name="generateSvg" argument="--generateSvg" type="boolean" checked="false" label="Generate SVG map" help="should the program generate an editable svg map of the processes?" /> 147 <param name="generateSvg" argument="--generateSvg" type="boolean" checked="false" label="Generate SVG map" help="should the program generate an editable svg map of the processes?" />