Mercurial > repos > bimib > marea
diff Marea/marea_cluster.xml @ 4:cf3d3d8f4ef5 draft
Modifica a xml
author | bimib |
---|---|
date | Tue, 13 Nov 2018 07:34:43 -0500 |
parents | 02577e65dcca |
children | 146cb8e171b8 |
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--- a/Marea/marea_cluster.xml Tue Nov 13 05:12:32 2018 -0500 +++ b/Marea/marea_cluster.xml Tue Nov 13 07:34:43 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="MaREA_cluester" name="MaREA cluster analysis"> +<tool id="MaREA_cluester" name="MaREA cluster analysis" version="1.0.0"> <description>of Reaction Activity Scores</description> <macros> <import>marea_macros.xml</import> @@ -11,7 +11,7 @@ <requirement type="package">scikit-learn</requirement> <requirement type="package">matplotlib</requirement> </requirements> - <command> + <command detect_errors="exit_code"> <![CDATA[ python $__tool_directory__/marea_cluster.py --rules_selector $cond_rule.rules_selector @@ -39,6 +39,10 @@ <when value="Custom"> <param name="Custom_rules" type="data" format="tabular, csv, tsv, xml" label="Custom rules" /> </when> + <when value="HMRcore"> + </when> + <when value="Recon"> + </when> </conditional> <param name="input" argument="--data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" /> <param name="name" argument="--name" type="text" label="Output name prefix" value="dataset" /> @@ -57,6 +61,8 @@ <option value="average">Average: average distance between all observations of two sets</option> </param> </when> + <when value="no"> + </when> </conditional> </inputs> @@ -70,7 +76,12 @@ <discover_datasets pattern="__name_and_ext__" directory="cluster_out" /> </collection> </outputs> - + <tests> + <test> + <param name="k_min" value="4"/> + <output name="log" file="log.txt"/> + </test> + </tests> <help> <![CDATA[