# HG changeset patch
# User luca_milaz
# Date 1724963819 0
# Node ID 7490fe8b3bf2db3c3d233de1c2861d76c90df9a7
# Parent  978a883ab2f4942002e9d6d9c2831fc59190b7ca
Uploaded

diff -r 978a883ab2f4 -r 7490fe8b3bf2 marea_2/flux_simulation.xml
--- a/marea_2/flux_simulation.xml	Thu Aug 29 20:31:50 2024 +0000
+++ b/marea_2/flux_simulation.xml	Thu Aug 29 20:36:59 2024 +0000
@@ -98,12 +98,10 @@
     <![CDATA[
 What it does
 -------------
-
 This tool generates flux samples from a model in JSON or XML format using the CBS (Corner-based Sampling) and OPTGP (Improved Artificial Centering Hit-and-Run Sampler) algorithms. It can return sampled fluxes by applying summary statistics such as:
    - Mean
    - Median
    - Quantiles (0.25, 0.50, 0.75)
-   
 Additionally, flux analysis can be performed on the metabolic model, including:
    - Parsimonious-FBA (optimized by Biomass)
    - FVA (Flux Variability Analysis)
@@ -119,6 +117,8 @@
    - **Samples:** A CSV file reporting the sampled fluxes for each reaction.
    - **Log File:** A text file (.txt) containing logs of the operation.
 
+.. class:: infomark
+
 **Tip:** The 'Batches' parameter is useful for managing memory usage by processing samples in smaller batches. For example, if you want to sample 10,000 points, it is recommended to set `n_samples = 1,000` and `n_batches = 10`.
 ]]>
     </help>