# HG changeset patch
# User luca_milaz
# Date 1726661027 0
# Node ID b2b2312b8f77b387140c13d1647eea49feb86d7c
# Parent  5b703d9a45d58bce1a41cf553dd949c9cd25f3d2
Uploaded

diff -r 5b703d9a45d5 -r b2b2312b8f77 marea_2/custom_data_generator.xml
--- a/marea_2/custom_data_generator.xml	Wed Sep 18 09:34:01 2024 +0000
+++ b/marea_2/custom_data_generator.xml	Wed Sep 18 12:03:47 2024 +0000
@@ -43,7 +43,8 @@
 What it does
 -------------
 
-This tool generates two files containing reactions and rules respectively, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules.
+This tool generates four files containing reactions, rules, reaction bounds and medium composition respectively, starting from a custom model in JSON or XML format.
+Reactions and rules can be used as inputs for the RAS and RPS generator tools.
 
 Accepted files:
     - A model: JSON or XML file reporting reactions and rules contained in the model.   
@@ -55,6 +56,8 @@
 The tool generates:
     - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle.
     - reactions: reporting the reactions in the custom model given. Format: csv or pickle.
+    - reaction bounds: reporting the lower and upper bounds of each model reaction. Format: csv or pickle.
+    - medium composition: reporting the list of exchange/transport reactions. Format: csv or pickle.
     - a log file (.txt).
     ]]>
     </help>