# HG changeset patch
# User francesco_lapi
# Date 1721991580 0
# Node ID c9908e5f107fece02e673935cc1f0d12c252a4f2
# Parent  f327ddec6749b545b2e54b582d8f4d69902c1a34
Uploaded

diff -r f327ddec6749 -r c9908e5f107f marea_2/marea.py
--- a/marea_2/marea.py	Fri Jul 26 10:33:58 2024 +0000
+++ b/marea_2/marea.py	Fri Jul 26 10:59:40 2024 +0000
@@ -288,7 +288,7 @@
                 z_score = tmp[2]
                 if p_val < threshold_P_V:
                     if not isinstance(f_c, str):
-                        if abs(f_c) < math.log(threshold_F_C, 2):
+                        if abs(f_c) < ((threshold_F_C - 1) / (abs(threshold_F_C) + 1)): # 
                             col = grey
                             width = str(minT)
                         else:
@@ -489,7 +489,7 @@
             INSIGNIFICANT_ARROW.styleReactionElements(metabMap, reactionId)
             continue
 
-        if abs(foldChange) < math.log(ARGS.fChange, 2):
+        if abs(foldChange) <  (ARGS.fChange - 1) / (abs(ARGS.fChange) + 1):
             INVALID_ARROW.styleReactionElements(metabMap, reactionId)
             continue