Mercurial > repos > bimib > marea_2

changeset 332:7113cf797cfa draft

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Uploaded
author luca_milaz
date Mon, 05 Aug 2024 19:51:55 +0000
parents 7557495e090c
children 7056487831c4
files marea_2/ras_generator.py
diffstat 1 files changed, 0 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/ras_generator.py	Mon Aug 05 19:50:41 2024 +0000
+++ b/marea_2/ras_generator.py	Mon Aug 05 19:51:55 2024 +0000
@@ -654,14 +654,6 @@
     Returns:
         Dict[str, ruleUtils.OpList] : dict mapping reaction IDs to rules.
     """
-    datFilePath = utils.FilePath.fromStrPath(ARGS.rule_list) # actual file, stored in galaxy as a .dat
-    
-    try: filenamePath = utils.FilePath.fromStrPath(ARGS.rules_name) # file's name in input, to determine its original ext
-    except utils.PathErr as err:
-        raise utils.PathErr(filenamePath, f"Please make sure your file's name is a valid file path, {err.msg}")
-    
-     
-    if filenamePath.ext is utils.FileFormat.PICKLE: return utils.readPickle(ARGS.rule_list)
 
     # csv rules need to be parsed, those in a pickle format are taken to be pre-parsed.
     return { line[0] : ruleUtils.parseRuleToNestedList(line[1]) for line in utils.readCsv(ARGS.rule_list) }