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author biocomp-ibens
date Wed, 16 May 2018 09:49:18 -0400
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1 categories:
2 - Graphics
3 - Next Gen Mappers
4 - Sequence Analysis
5 - Visualization
6 description: Plot the distribution of the genomic features captured by aligned reads
7 long_description:
8 ALFA provides a global overview of features distribution composing New Generation Sequencing dataset(s).
9 Given a set of aligned reads (BAM files) and an annotation file (GTF format), the tool produces plots of the raw and normalized distributions of those reads among genomic categories (stop codon, 5'-UTR, CDS, intergenic, etc.) and biotypes (protein coding genes, miRNA, tRNA, etc.). Whatever the sequencing technique, whatever the organism.
10 https://github.com/biocompibens/ALFA
11 name: alfa
12 owner: charles_bernard
13 remote_repository_url: https://github.com/biocompibens/ALFA/tree/master/Galaxy_toolshed_repositories/ALFA
14 type: unrestricted