Mercurial > repos > bioinformatics_lab_ufsc > epibuilder

annotate test-data/command-epifinder-parameters.txt @ 3:0fccf1695099 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 04:24:01 +0000
parents ef26009cd70a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
1
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
2 ---- Running Parameters ----
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
3 BepiPred-2.0 Threshold : 0.6
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
4 Min epitope length : 10
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
5 Max epitope length : 30
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
6
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
7 ---- Softwares Threshold ----
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
8 Emini : 0.8
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
9 Parker : 0.8
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
10 Chou Fosman : 0.8
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
11 Karplus Schulz : 0.8
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
12 Kolaskar : 0.8
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
13
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
14 ---- Proteomes ----
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
15 Alias File
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
16 test_proteom /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
17
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
18 ---- Blast ----
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
19 Identity : 90.0
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
20 Cover : 90.0
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
21 Word size : 4
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
22 Task blastp-short: blastp-short
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
23
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
24 ---- Stats ----
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
25 Processed proteins : 6
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
26 NGlycosylated proteins : 0
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
27 Identified epitopes : 3
ef26009cd70a Uploaded version 1.1
bioinformatics_lab_ufsc
parents:
diff changeset
28 N-glycosylated epitopes: 0