annotate test-data/online-epifinder.log @ 2:8fa9e663cca5
draft
Uploaded corrected condition for use_hit
| author |
bioinformatics_lab_ufsc |
| date |
Thu, 25 Nov 2021 03:59:45 +0000 |
| parents |
ef26009cd70a |
| children |
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line source |
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1 makeblastdb -dbtype prot -in /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta -out ./online-test_proteom Success:
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4 Building a new DB, current time: 03/20/2021 00:12:41
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5 New DB name: /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/online-test_proteom
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6 New DB title: /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
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7 Sequence type: Protein
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8 Keep Linkouts: T
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9 Keep MBits: T
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10 Maximum file size: 1000000000B
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11 Adding sequences from FASTA; added 6 sequences in 0.00433183 seconds.
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12 Error:
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13 blastp -query ./online-epifinder-epitopes-fasta.fasta -db ./online-test_proteom -outfmt 6 qacc sacc pident qcovs qseq sseq qacc -task blastp-short -word_size 4 -out ./online-test_proteom_blast.csv Success:
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14 Error:
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