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comparison test-data/command-epifinder.log @ 0:ef26009cd70a draft

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Uploaded version 1.1
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 01:26:36 +0000
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-1:000000000000 0:ef26009cd70a
1 makeblastdb -dbtype prot -in /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta -out ./command-test_proteom Success:
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4 Building a new DB, current time: 03/20/2021 00:04:04
5 New DB name: /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/command-test_proteom
6 New DB title: /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
7 Sequence type: Protein
8 Keep Linkouts: T
9 Keep MBits: T
10 Maximum file size: 1000000000B
11 Adding sequences from FASTA; added 6 sequences in 0.00420094 seconds.
12 Error:
13 blastp -query ./command-epifinder-epitopes-fasta.fasta -db ./command-test_proteom -outfmt 6 qacc sacc pident qcovs qseq sseq qacc -task blastp-short -word_size 4 -out ./command-test_proteom_blast.csv Success:
14 Error: