Mercurial > repos > bioinformatics_lab_ufsc > epibuilder

comparison test-data/online-epifinder.txt @ 0:ef26009cd70a draft

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Uploaded version 1.1
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 01:26:36 +0000
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1
2 ---- Running Parameters ----
3 BepiPred-2.0 Threshold : 0.6
4 Min epitope length : 10
5 Max epitope length : 30
6
7 ---- Softwares Threshold ----
8 Emini : 0.8
9 Parker : 0.8
10 Chou Fosman : 0.8
11 Karplus Schulz : 0.8
12 Kolaskar : 0.8
13
14 ---- Proteomes ----
15 Alias File
16 test_proteom /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
17
18 ---- Blast ----
19 Identity : 90.0
20 Cover : 90.0
21 Word size : 4
22 Task blastp-short: blastp-short
23
24 ---- Stats ----
25 Processed proteins : 6
26 NGlycosylated proteins : 0
27 Identified epitopes : 2
28 N-glycosylated epitopes: 0
29
30 ---- Protein Summary ----
31 Id Epitopes N-Glyc
32 4WFF_B 1 0
33 5BVP_A 0 0
34 4XAK_A 0 0
35 4WFF_A 1 0
36 5C0N_A 0 0
37 4Z5R_A 0 0
38
39 ---- Epitopes list ----
40 N Id Epitope Start End N-Glyc N-Glyc-Count N-Glyc-Motifs Length MW(kDa) I.P Hydropathy All Matches Cover Avg Cover BepiPred2 Emini Parker Chou Fosman Karplus Schulz Kolaskar test_proteom_count test_proteom_acc test_proteom_count test_proteom_id
41 1 4WFF_A FLKWHVPPELVRVLSA 149 165 N 0 - 16 1.89 8.75 0.54 0.06 0.58 0.64 0.78 -1.78 0.83 0.96 1.11 2 4WFF_A Chain A of Human TRAAK K+ channel in a K+ bound nonconductive conformation,4WFF_B Chain B of Human TRAAK K+ channel in a K+ bound nonconductive conformation 2 4WFF_B(100.00,100.00),4WFF_A(100.00,100.00)
42 2 4WFF_B AIFLKWHVPPELVRVLSAML 149 169 N 0 - 20 2.32 8.80 1.03 0.05 0.54 0.64 0.67 -2.18 0.80 0.95 1.11 2 4WFF_A Chain A of Human TRAAK K+ channel in a K+ bound nonconductive conformation,4WFF_B Chain B of Human TRAAK K+ channel in a K+ bound nonconductive conformation 2 4WFF_B(100.00,100.00),4WFF_A(100.00,100.00)
43
44 ---- Epitopes topology ----
45 N Id Method Threshold Avg Score Cover Epitope Start End N-Glyc N-Glyc-Count N-Glyc-Motifs Length kDa I.P Avg Hydropathy Avg Cover
46 1 4WFF_A BepiPred-2.0 0.60 0.64 - FLKWHVPPELVRVLSA 149 165 N 0 - 16 1.89 8.75 0.54 0.58
47 Emini 0.80 0.78 0.38 ...EEEE.EE......
48 Parker 0.80 -1.78 0.06 .....E..........
49 Chou Fosman 0.80 0.83 0.44 ...EEEEEEE......
50 Karplus Schulz 0.80 0.96 1.00 EEEEEEEEEEEEEEEE
51 Kolaskar 0.80 1.11 1.00 EEEEEEEEEEEEEEEE
52 All matches - - 0.06 .....E..........
53 N-Glyc - - - ................
54 Hydropathy - 0.54 - ++---+---++-++-+
55 2 4WFF_B BepiPred-2.0 0.60 0.64 - AIFLKWHVPPELVRVLSAML 149 169 N 0 - 20 2.32 8.80 1.03 0.54
56 Emini 0.80 0.67 0.30 .....EEEE.EE........
57 Parker 0.80 -2.18 0.05 .......E............
58 Chou Fosman 0.80 0.80 0.35 .....EEEEEEE........
59 Karplus Schulz 0.80 0.95 1.00 EEEEEEEEEEEEEEEEEEEE
60 Kolaskar 0.80 1.11 1.00 EEEEEEEEEEEEEEEEEEEE
61 All matches - - 0.05 .......E............
62 N-Glyc - - - ....................
63 Hydropathy - 1.03 - ++++---+---++-++-+++
64 Generated files:
65 ./online-epifinder-parameters.txt
66 ./online-epifinder-protein-summary.tsv
67 ./online-epifinder-topology.tsv
68 ./online-epifinder-epitope-detail.tsv
69 ./online-epifinder-scores.tsv
70 ./online-epifinder-epitopes-fasta.fasta