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view test-data/command-epifinder.log @ 1:57555f63bbd3 draft

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Deleted xml interface
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 03:59:02 +0000
parents ef26009cd70a
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makeblastdb -dbtype prot -in /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta -out ./command-test_proteom Success:


Building a new DB, current time: 03/20/2021 00:04:04
New DB name:   /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/command-test_proteom
New DB title:  /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
Sequence type: Protein
Keep Linkouts: T
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 6 sequences in 0.00420094 seconds.
Error:
blastp -query ./command-epifinder-epitopes-fasta.fasta -db ./command-test_proteom -outfmt 6 qacc sacc pident qcovs qseq sseq qacc -task blastp-short -word_size 4 -out ./command-test_proteom_blast.csv Success:
Error: