Mercurial > repos > bioinformatics_lab_ufsc > epibuilder
view test-data/command-epifinder-topology.tsv @ 2:8fa9e663cca5 draft
Uploaded corrected condition for use_hit
| author | bioinformatics_lab_ufsc |
|---|---|
| date | Thu, 25 Nov 2021 03:59:45 +0000 |
| parents | ef26009cd70a |
| children |
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N Id Method Threshold Avg Score Cover Epitope Start End N-Glyc N-Glyc-Count N-Glyc-Motifs Length kDa I.P Avg Hydropathy Avg Cover 1 4WFF_B Chain B of Human TRAAK K+ channel in a K+ bound nonconductive conformation BepiPred-2.0 0.60 0.65 - PETQSSHSAW 73 83 N 0 - 10 1.13 5.25 -1.40 0.98 Emini 0.80 2.57 0.90 EEEEEEEEE. Parker 0.80 4.19 1.00 EEEEEEEEEE Chou Fosman 0.80 1.13 1.00 EEEEEEEEEE Karplus Schulz 0.80 1.04 1.00 EEEEEEEEEE Kolaskar 0.80 0.99 1.00 EEEEEEEEEE All matches - - 0.90 EEEEEEEEE. N-Glyc - - - .......... Hydropathy - -1.40 - --------+- 2 4WFF_B Chain B of Human TRAAK K+ channel in a K+ bound nonconductive conformation BepiPred-2.0 0.60 0.64 - AIFLKWHVPPELVR 149 163 N 0 - 14 1.71 8.80 0.42 0.60 Emini 0.80 0.82 0.43 .....EEEE.EE.. Parker 0.80 -1.83 0.07 .......E...... Chou Fosman 0.80 0.83 0.50 .....EEEEEEE.. Karplus Schulz 0.80 0.96 1.00 EEEEEEEEEEEEEE Kolaskar 0.80 1.10 1.00 EEEEEEEEEEEEEE All matches - - 0.07 .......E...... N-Glyc - - - .............. Hydropathy - 0.42 - ++++---+---++- 3 4WFF_A Chain A of Human TRAAK K+ channel in a K+ bound nonconductive conformation BepiPred-2.0 0.60 0.63 - LKWHVPPELVRVLSA 150 165 N 0 - 15 1.74 8.75 0.39 0.59 Emini 0.80 0.81 0.40 ..EEEE.EE...... Parker 0.80 -1.70 0.07 ....E.......... Chou Fosman 0.80 0.84 0.47 ..EEEEEEE...... Karplus Schulz 0.80 0.96 1.00 EEEEEEEEEEEEEEE Kolaskar 0.80 1.11 1.00 EEEEEEEEEEEEEEE All matches - - 0.07 ....E.......... N-Glyc - - - ............... Hydropathy - 0.39 - +---+---++-++-+