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view test-data/online-epifinder.log @ 2:8fa9e663cca5 draft

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Uploaded corrected condition for use_hit
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 03:59:45 +0000
parents ef26009cd70a
children
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makeblastdb -dbtype prot -in /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta -out ./online-test_proteom Success:


Building a new DB, current time: 03/20/2021 00:12:41
New DB name:   /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/online-test_proteom
New DB title:  /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
Sequence type: Protein
Keep Linkouts: T
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 6 sequences in 0.00433183 seconds.
Error:
blastp -query ./online-epifinder-epitopes-fasta.fasta -db ./online-test_proteom -outfmt 6 qacc sacc pident qcovs qseq sseq qacc -task blastp-short -word_size 4 -out ./online-test_proteom_blast.csv Success:
Error: