Mercurial > repos > bioinformatics_lab_ufsc > epifinder

annotate test-data/online-epifinder.log @ 3:68bb74b57734 draft

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author bioinformatics_lab_ufsc
date Mon, 29 Mar 2021 23:44:21 +0000
parents a8b913eaad2c
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1 makeblastdb -dbtype prot -in /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta -out ./online-test_proteom Success:
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4 Building a new DB, current time: 03/20/2021 00:12:41
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5 New DB name: /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/online-test_proteom
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6 New DB title: /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
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7 Sequence type: Protein
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8 Keep Linkouts: T
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9 Keep MBits: T
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10 Maximum file size: 1000000000B
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11 Adding sequences from FASTA; added 6 sequences in 0.00433183 seconds.
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12 Error:
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13 blastp -query ./online-epifinder-epitopes-fasta.fasta -db ./online-test_proteom -outfmt 6 qacc sacc pident qcovs qseq sseq qacc -task blastp-short -word_size 4 -out ./online-test_proteom_blast.csv Success:
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14 Error: