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comparison chimerascan.xml @ 2:ec38f053b647 draft

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planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty
author bioitcore
date Tue, 12 Sep 2017 13:59:07 -0400
parents d85dea371064
children 27d8ed014662
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1:b9877fa1159a 2:ec38f053b647
1 <tool id="chimerascan" name="ChimeraScan"> 1 <tool id="chimerascan" name="ChimeraScan">
2 <description>A tool for identifying chimeric transcription in sequencing data.</description> 2 <description>A tool for identifying chimeric transcription in sequencing data.</description>
3 <command detect_errors="exit_code" interpreter="python"> 3 <command detect_errors="exit_code">
4 $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex 4 bash $__tool_directory__/run.sh && python $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex
5 #if $input_type_conditional.chimerascan_input_type == "paired" 5 #if $input_type_conditional.chimerascan_input_type == "paired"
6 $input_type_conditional.input_1 $input_type_conditional.input_2 6 $input_type_conditional.input_1 $input_type_conditional.input_2
7 #else 7 #else
8 $input_type_conditional.input.forward $input_type_conditional.input.reverse 8 $input_type_conditional.input.forward $input_type_conditional.input.reverse
9 #end if 9 #end if