# HG changeset patch
# User bioitcore
# Date 1505329626 14400
# Node ID c6b0f5c3f3b4416eae99a4145ca110a95cd97384
# Parent  713d8c903d0d2382117e7ac48ed8c0cfcec1a8c7
planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty

diff -r 713d8c903d0d -r c6b0f5c3f3b4 run.sh
--- a/run.sh	Wed Sep 13 14:42:12 2017 -0400
+++ b/run.sh	Wed Sep 13 15:07:06 2017 -0400
@@ -1,6 +1,8 @@
 #!/usr/bin/bash
 
-if [ "$(cat installation_chk 2>&1)" != "true" ]; then
-	python setup.py build && python setup.py install
-	echo true > installation_chk 
+if [ "$(cat $1/installation_chk 2>&1)" != "true" ]; then
+        python $1/setup.py build && python $1/setup.py install
+	mv $1/chimerascan $1/chimerascan_bak
+	ln -s /usr/local/lib/python2.7/dist-packages/chimerascan $1
+        echo true > $1/installation_chk
 fi